BAC Information

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BAC

Clone NameMSMg01-149C05
Chromosome18 (Build37)
Map Location 87,447,490 - 87,447,831
singlet/doubletsinglet
Overlap genenone
Upstream geneNeto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318
Downstream genePpia-ps18_1039.1, LOC329008, LOC100039961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149C05.T7 (MSMg01no149_c05.b1)MSMg01-149C05.TJ (MSMg01no149_c05.g1)
ACCAG351941AG351942
length711708
length of high quality
(start - end)
262 (54 - 315)346 (77 - 422)
definitionCHROMAT_FILE: MSMg01no149_c05.b1 PHD_FILE: MSMg01no149_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:18 2005CHROMAT_FILE: MSMg01no149_c05.g1 PHD_FILE: MSMg01no149_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATCTATAATTGCGGCGCTAAACGACTCCTATATTTCAAAATCCGCGGA
ATCACTCCTAGTTTCCCCCATTCTCGGGGTGTAATAGTGGGTGATGGGCA
AGCAACGAATCAGGAGCTGTCACGCAATATCAGGTGCTGAAACGTCACGC
TGCGGGTTATAATAGCAGTGCCATTTTCCCGGTTTGGGATCTTCCTGAGA
AGCAAGCAATAAAGCGTTTGCCGAGGAAGATTCTGGTTTGTTGCGTCTTT
CTTGCCGGTCGAGCGGGACGCAATAGTTAAGTCCTGTGAACAAAAGTACA
TTTTGGAGAGGGTATCAGGAAGGAAAAAAAATGTTTTCTGGAGAAAGAAC
TGAGTCCTCTTTCAATCCGTGAGCCAGCTCAAAGATAATCATCATTTCTG
TTTAGAGAAGAGGTTTGCTCTCGCGTCTTTCAAGGAGAAACTCTCTGGAA
TTTGCCAGGTAACGAATGGGATACTGCGTACGAGTCAAATATCTTAAAAT
CATTTGTCAAGCAGTGACTTTACAATAGAAACACCAGATTATTACCCGTG
CTACATAATGCATGGACGGGGAACAAGAAAATGTCTTCACTTCACCCAAA
GAATCTCCATGTGCTGGGAGAGAAAATGAACCTTTTGGAAACAGTGCATT
TCATTTCAAAACCGTGTGCCACAAAACAACATTCTGTTTTCTTGCCATGG
CCCACAGAATN
CCCATGATAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATACCACTTCAGTGCAGTAAGAAA
AACAGCTTGAATCTCAGAGAGAACCTTATGTAGGTGGAATCATTGAAGAA
TATGAAAAGGGGAACATGATTCCAAAAGCTACATTCCAGTATGGGTGAAT
GAGAACAAGTTGAACATTGGCTTAGATGAAATGAAATTGAACTGGCATTC
ACTCGAGTGAAATCATGGAAGAAGCAACATTTTTTTTTTTAAATATGTAC
AAACAGAGTGACATTGCAAGTATTCTCTGAGTTTATAGTTGAAGTAAAGA
TCACATCTGGAGTGTCTGAAATCATTGAACATTGATCTCTTATCTGTGAG
AATAACGAATAACAATGTACTTTATCAGACAATGTCACACTTACATCACT
GGGAAGTAGACTTTACAGCAGCTCACTTGCTACTAATACAGGAACCATTA
TCAATTGACACTTTTTTTTGTGCTGTAAACAAAATATATTTCTTCATAAA
AATTGTGATCTATTCTGAGCTGCTTTGCACAGGGTAAGAGGCAGGAATCT
AGTTTCATTTTCTTTTTGTTCTTTCCCACTTTTTTTCCCTTTTTTACTAG
GTATCTACCTCATTTACTTTTCCCATGCTTTTACCTAAAGTCTCCACTTT
CTTACCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_c05.g1 MSMg01no149_c05.g1 CHROMAT_FILE:
MSMg01no149_c05.g1 PHD_FILE: MSMg01no149_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:18 2005
         (346 letters)



>mm_chr18_87447290_87448034
          Length = 745

 Score =  648 bits (335), Expect = 0.0
 Identities = 341/343 (99%), Gaps = 1/343 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataccacttcagtgcagtaagaaaaacagcttgaatctcagagagaaccttatgtaggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ataccacttcagtgcagtaagaaaaacagcttgaatctcagagagaaccttatgtaggtg 483

                                                                       
Query: 61  gaatcattgaagaatatgaaaaggggaacatgattccaaaagctacattccagtatgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gaatcattgaagaatatgaaaaggggaacatgattccaaaagctacattccagtatgggt 423

                                                                       
Query: 121 gaatgagaacaagttgaacattggcttagatgaaatgaaattgaactggcattcactcga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gaatgagaacaagttgaacattggcttagatgaaatgaaattgaactggcattcactcga 363

                                                                       
Query: 181 gtgaaatcatggaagaagcaacatttttttttttaaatatgtacaaacagagtgacattg 240
           ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 362 gtgaaatcatggaagaagcaagatttttttttt-aaatatgtacaaacagagtgacattg 304

                                                                       
Query: 241 caagtattctctgagtttatagttgaagtaaagatcacatctggagtgtctgaaatcatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 caagtattctctgagtttatagttgaagtaaagatcacatctggagtgtctgaaatcatt 244

                                                      
Query: 301 gaacattgatctcttatctgtgagaataacgaataacaatgta 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gaacattgatctcttatctgtgagaataacgaataacaatgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 745
Length adjustment: 9
Effective length of query: 337
Effective length of database: 736
Effective search space:   248032
Effective search space used:   248032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)