BAC Information

Click to search

BAC

Clone NameMSMg01-149F17
Chromosome18 (Build37)
Map Location 78,769,566 - 78,770,066
singlet/doubletsinglet
Overlap geneSlc14a2
Upstream geneRnf165, 8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1, EG620155
Downstream geneSetbp1, LOC100039242
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-149F17.T7 (MSMg01no149_f17.b1)MSMg01-149F17.TJ (MSMg01no149_f17.g1)
ACCAG352098AG352099
length679681
length of high quality
(start - end)
513 (47 - 559)495 (76 - 570)
definitionCHROMAT_FILE: MSMg01no149_f17.b1 PHD_FILE: MSMg01no149_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:35 2005CHROMAT_FILE: MSMg01no149_f17.g1 PHD_FILE: MSMg01no149_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:12:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGC
GGAATTCTTCCTTTTCCATTTCCATTTTCTCATTACGAATGTCTTTTCTA
TAAGACAAAAGAGAATCTGTCATTGATTAAAGGGATTAAGAATAAGAACA
ATAAAAATGAGGATCATGTTAGTGACAGGATATGGGGTGATTTATTATTA
TTACAACATTTTCTTTAAAGTTAAATTGTATTTTGGTCAACAAGAAAAAG
AAAAAAATTATTTCAGATCATTGAACAAGAATATATGACCTAATTACCAT
GGCAGTGGTAAGTCTTCCTAAATGTAATTGTCAAAAAATTTCTGAAGATG
GAGCTGCTTGCGAAAGGCTTGGGTTTCTCTGTATGTTGTTGCTGGACCGT
GATATAAGGACTCCCTCTTTGCATAGGTGGGACTCATTACTGTCGGGTGA
ACCTTCTAGCTTATGGTTACCAGGTTCTTCTGATTGTCAGAAAAGGAATT
TTAAACACTTGGTGACATCTAGATTACACCCATTCATTTCCACCGAGCCA
GAGAACAGGTCTTCAGTATCCTTTAAGAGTGATTCCTTCATGGAGCATCT
AGGTCTCACCTCTCTGCTTCCAAACTGGCAGTGGAGAAGATGCATGTCTC
TTAACTGAAGACTACCAAAGAATCCAGAG
TCTCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATATCGAATGGCAG
AGAAGCTCCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAA
TACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCCAATGGATGAACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAG
TGGATACTAGCCCCAAACCTAGGATACCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no149_f17.b1 MSMg01no149_f17.b1 CHROMAT_FILE:
MSMg01no149_f17.b1 PHD_FILE: MSMg01no149_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:12:35 2005
         (513 letters)



>mm_chr18_78769452_78770364
          Length = 913

 Score =  897 bits (464), Expect = 0.0
 Identities = 494/508 (97%), Gaps = 7/508 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcttccttttccatttccattttctcattacgaatgtcttttctataagacaaaag 65
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gaattcttccttttctatttccattttctcattacgaatgtcttttctataagacaaaag 556

                                                                       
Query: 66  agaatctgtcattgattaaagggattaagaataagaacaataaaaatgaggatcatgtta 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 agaatctgtcattgattaaagggattaagaataagaacaataaaaatgaggatcatgtta 496

                                                                       
Query: 126 gtgacaggatatggggtgatttattattattacaacattttctttaaagttaaattgtat 185
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gtgacagggtatggggtgatttattattattacaacattttctttaaagttaaattgtat 436

                                                                       
Query: 186 tttggtcaacaagaaaaagaaaaaaattatttcagatcattgaacaagaatatatgacct 245
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 435 tttggtcaacaagaaaaagaaaaaaaatatttcagatcattgaacaagaatatatgacct 376

                                                                       
Query: 246 aattaccatggcagtggtaagtcttcctaaatgtaattgtcaaaaaatttctgaagatgg 305
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aattaccatggcagtggcaagtcttcctaaatgtaattgtcaaaaaatttctgaagatgg 316

                                                                       
Query: 306 agctgcttgcgaaaggcttgggtttctctgtatgttgttgctggaccgtgatataaggac 365
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 315 agctgcttgcgaaaggcttgggtttctctgtatgttgttgctggaccgtaatataaggac 256

                                                                       
Query: 366 tccctctttgcataggtgggactcattactgtcgggtgaaccttctagcttatggttacc 425
           |||||||||||||||||||||||||||||||||||||||||||||||||       ||||
Sbjct: 255 tccctctttgcataggtgggactcattactgtcgggtgaaccttctagc-------tacc 203

                                                                       
Query: 426 aggttcttctgattgtcagaaaaggaattttaaacacttggtgacatctagattacaccc 485
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aggttcttctgactgccagaaaaggaattttaaacacttggtgacatctagattacaccc 143

                                       
Query: 486 attcatttccaccgagccagagaacagg 513
           ||||||||||||||||||||||||||||
Sbjct: 142 attcatttccaccgagccagagaacagg 115


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)