BAC Information

Click to search

BAC

Clone NameMSMg01-150O09
Chromosome18 (Build37)
Map Location 33,959,255 - 33,959,753
singlet/doubletsinglet
Overlap geneEpb4.1l4a
Upstream geneTslp, Wdr36, Camk4, Stard4, EG433170, D0H4S114, ENSMUSG00000073610, LOC666281, LOC100041258
Downstream geneEG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-150O09.T7 (MSMg01no150_o09.b1)MSMg01-150O09.TJ (MSMg01no150_o09.g1)
ACCAG353213AG353214
length719729
length of high quality
(start - end)
445 (40 - 484)509 (77 - 585)
definitionCHROMAT_FILE: MSMg01no150_o09.b1 PHD_FILE: MSMg01no150_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:34 2005CHROMAT_FILE: MSMg01no150_o09.g1 PHD_FILE: MSMg01no150_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:14:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CTATATAACCCAAGCTGGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCC
TCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTC
TGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTG
CCTCTGCCTCTGCCTCACCCTGACCCTGACCCTCACCCTGATCCTCACCC
TGATCCTCACCCTGACCCTGACCCTGCCTCTGCATCTGTCCTTCAAGTTC
TGAGATTTAAAATGCCTACCTCTAAGGCTAACTTGCTTTCTTCTATAAGT
CCCTTTTCCAACTGAAAAGTAACTAAGACAGAAACAGTACCAGGAGGAAG
TAGACTATTACTGTTACAGACCTGACCATATGACTTTTTGTTCTGAACTA
AGACTTTGAATGAAGAACAAGGTTGAACACTTTAGCAGAGCTTAAAAGCC
CATCCTACAAGGACAATAATGCTGAGAGTAATGCTGGCTATGGAAGTTTT
AGCTCAATCTGCTCAGGAGATTTCAGAGTGTGACACTATTGGCCAGTAAG
CTAGAGACTGTTCTTGTGCTATCTTGACCAAGAATGTGACCGCTTTCAGA
CTTTGTCCTAACAATTTACCTGAGGCTAAATTTAACATAATGCACTTATT
TATTTGGAGCAAGAGATTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTTGAATTATTTCCAGGAACATG
GGAGGAGCTCACTTTACAACTCCCCCTCTATAACCCGGTATTCCCAACCA
GAAAAACTGCAGGTTTAGCTTCCCCAGGCTCTTCCCACATATCTTGTGGG
AATCAGTTCTCTCCTTCCATCATGCTGGTCTCTCTGGGACTCAGGTCAAG
CTTCGCGGCTGGCGAGCCAGCGCTTTTACCATCATTTGTATAGGTCAAGG
ATGGATTTTTTTTTAAAAAGTTAAGTGCTTAAGAGACTTACGGTGTATAA
TGTGACTTTTAAAAATGTGTCCACACTGTGAAATTGTCAATCAGGAAGGC
ACATACGTCTACCACCCGATCTTTATGTGTGCGCCAAGAACGTTGAAGAA
TTTAACAGTTTCCAAGTGTAGATGGAGTCAGCTAGAACCGACCTCTGACA
GAAGATGAAGCTTCTGTTTTCACTGGAGATATTTCCTTCCGTATTCCTGA
AGAGAACCCAACTAAATTCTCAGAAGTATTTAGAGCTTACTGGTTAGGCA
GGCTGGGTAGAGCACACCTGTGTTCTCCGAGAGTCTGGAGGCGGAGGTGG
AGGTGGAGGTAGAGCCGGTAGAGCACTCAGGTTTTAGGGCTACTTGGGTC
TACACAGCGCAAGCCAGGACTACTCCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no150_o09.g1 MSMg01no150_o09.g1 CHROMAT_FILE:
MSMg01no150_o09.g1 PHD_FILE: MSMg01no150_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:14:34 2005
         (509 letters)



>mm_chr18_33958847_33959753
          Length = 907

 Score =  864 bits (447), Expect = 0.0
 Identities = 487/501 (97%), Gaps = 2/501 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattatttccaggaacatgggaggagctcactttacaactccccctctataacccggtat 65
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 907 aattatttccaggaacatgggaggagcacactttacaactccccctctataacccggtat 848

                                                                       
Query: 66  tcccaaccagaaaaactgcaggtttagcttccccaggctcttcccacatatcttgtggga 125
           ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct: 847 tcccaaccagaaaaactgcaggtctagcttccccaggctcttcccacacatcttgtggga 788

                                                                       
Query: 126 atcagttctctccttccatcatgctggtctctctgggactcaggtcaagcttcgcggctg 185
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 787 atcagttctctccttccatcatgctggtctctctgggactcaggtcaggcttcgcggctg 728

                                                                       
Query: 186 gcgagccagcgcttttaccatcatttgtataggtcaaggatggatttttttttaaaaagt 245
           |||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||
Sbjct: 727 gcgagccagcgcttttaccatcgtttgtataggtcaaggatggatttttttt--aaaagt 670

                                                                       
Query: 246 taagtgcttaagagacttacggtgtataatgtgacttttaaaaatgtgtccacactgtga 305
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 669 taagtgcttaagagacttacggtatataatgtgacttttaaaaatgtgtccacactgtga 610

                                                                       
Query: 306 aattgtcaatcaggaaggcacatacgtctaccacccgatctttatgtgtgcgccaagaac 365
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 609 aattgtcaatcaggaaggcacatacgtcttccacccgatctttatgtgtgcgccaagaac 550

                                                                       
Query: 366 gttgaagaatttaacagtttccaagtgtagatggagtcagctagaaccgacctctgacag 425
           ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 549 gttgaagaattcaacagtttccaagtgtagatggagtcagctagaaccaacctctgacag 490

                                                                       
Query: 426 aagatgaagcttctgttttcactggagatatttccttccgtattcctgaagagaacccaa 485
           |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 489 aagatgaagcttctcttttcactggagatatttccttctgtattcctgaagagaacccaa 430

                                
Query: 486 ctaaattctcagaagtattta 506
           |||||||||||||| ||||||
Sbjct: 429 ctaaattctcagaattattta 409


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 907
Length adjustment: 10
Effective length of query: 499
Effective length of database: 897
Effective search space:   447603
Effective search space used:   447603
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)