Query= MSMg01no152_j04.b1 MSMg01no152_j04.b1 CHROMAT_FILE:
MSMg01no152_j04.b1 PHD_FILE: MSMg01no152_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:42 2005
(179 letters)
>mm_chr18_86584552_86585130
Length = 579
Score = 284 bits (147), Expect = 2e-81
Identities = 159/163 (97%)
Strand = Plus / Plus
Query: 1 gacactaaagtaagacttttgctatggagatggagaacagatgtttacttccagttaaaa 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 gacactaaagtaagacttttgctatggagatggagaacaaatgtttacttccagttaaaa 260
Query: 61 tgttaaaataacccttctcataatgtccttttaatctggattttctgcatataaattaat 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattaaaataacccttctcataatgtccttttaatctggattttctgcatataaattaat 320
Query: 121 aatgtgtatctagatgtgtgtgtgtgtttgtgtttgtgtgtgt 163
||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 321 aatgtgtatctagatgtgtgtgtgtgtgtgtgtgtgtgtgtgt 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 179
Length of database: 579
Length adjustment: 8
Effective length of query: 171
Effective length of database: 571
Effective search space: 97641
Effective search space used: 97641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no152_j04.g1 MSMg01no152_j04.g1 CHROMAT_FILE:
MSMg01no152_j04.g1 PHD_FILE: MSMg01no152_j04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:16:42 2005
(471 letters)
>mm_chr18_86769962_86770832
Length = 871
Score = 864 bits (447), Expect = 0.0
Identities = 467/475 (98%), Gaps = 5/475 (1%)
Strand = Plus / Minus
Query: 1 agctttactttattttctttgtacttctactttgagccagccaaggcaggactgttacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agctttactttattttctttgtacttctactttgagccagccaaggcaggactgttacac 464
Query: 61 ttgccaatagatgtaaagaccttctcaaagctctcggtacatttacgcttatgactaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttgccaatagatgtaaagaccttctcaaagctctcggtacatttacgcttatgactaact 404
Query: 121 tccaagtgccctgtgattcatctgctatttcccatgtgtctattttagacttgccaacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tccaagtgccctgtgattcatctgctatttcccatgtgtctattttagacttgccaacag 344
Query: 181 gaaaaacatttctaaaatacgatgtgctttagcagtgtcttttgcaaatgacatatgcca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gaaaaacatttctaaaatacgatgtgctttagcagtgtcttttgcaaatgacatatgcca 284
Query: 241 cctaggcctctctgccacaaaggaaaatcccaattccacttccggtgaaagtcctgtaat 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cctaggcccctctgccacaaaggaaaatcccaattccacttccggtgaaagtcctgtaat 224
Query: 301 cagcttgaaagggacgaagataatttttccccttttattgaaaaca---ttttttttttc 357
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 223 cagcttgaaagggacgaagataatttttccccttttattgaaaacatttttttttttttc 164
Query: 358 atttcacacaagataacctggtaacggtttcttctcctcttctattataagtttctccct 417
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 atttcacacaagatatcctggtaacggtttcttctcctcttctattataagtttctccct 104
Query: 418 atacccaccctta-ctcaaatccactccacatataagcaaatacatttgtcctgt 471
||||||||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct: 103 atacccacccttatc-cagatccactccacatataagcaaatacatttgtcctgt 50
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
