BAC Information

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BAC

Clone NameMSMg01-152P11
Chromosome18 (Build37)
Map Location 29,341,847 - 29,342,131
singlet/doubletsinglet
Overlap genenone
Upstream geneEG271505, EG625997, BC051408
Downstream geneLOC100040930, 4930578E11Rik, LOC666073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-152P11.T7 (MSMg01no152_p11.b1)MSMg01-152P11.TJ (MSMg01no152_p11.g1)
ACCAG354696AG354697
length654774
length of high quality
(start - end)		77 (103 - 179)291 (80 - 370)
definitionCHROMAT_FILE: MSMg01no152_p11.b1 PHD_FILE: MSMg01no152_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:13 2005CHROMAT_FILE: MSMg01no152_p11.g1 PHD_FILE: MSMg01no152_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTACCCNNNNNCNCCCTCTAACCTNNNNCCTCTATXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCNGGAATCATGAAATTCTCA
GGCAAATGGATGCACCTGGAGGATATCAAACTGAGTGAGGTAACACAATC
ACAAAAGATCACACATGATATGCACTCACTAATNAATGGATATTAGCCCA
GAAACTTAGATATCCAAGATACAATTTGCAAAACACATGAAACTCAGGAA
GAAAGAAACCCAAGTGTGAAAACTTCGCTCTTTTCTTAAAAATGGGAAAC
AAAAACCCCATGGAAGGAATTTCCAAAACAAATTTTTTGAGTGGAAATAT
GGAAAGAAATGTTTTTTCCCAAAAATTGGCCCCCCCTCCCGGGGGGTTTT
TTCCCCTAATACAACCCCCCCCCAAAAAAAAAAAAAACTATGTTGGGATT
TTTTTAATAAAAAATTTTTTTTTTTGACCCCAACCCCGAAATAACTTGTC
CCCTTGGGGAGGGCTTTCCCCCGCCCTTACCCAAAAAAAAAATCCTCCCC
TTTNTTCCCCCCACCCTTTGTGAAAAAAAAAAAGCCCTCTCCNNTTTNCC
TTTTGCCTTTTTTTAAAAATTATTCCCTCTGGGTCCCCCTTTATTATAGC
TTTC

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGAAAAGGAACAGAGGGCAG
GTTGATAAGAAAACATGCCAGATATACATGAGATTCTTAATAAAATAAAA
TATTGAAGAAAAGTTCGATATTCACTATGAACTTTTCATATCAGAATGGG
ATTTATGATTCATAGTCATTCATATTGTCATGAAAATTAAATGCTTAATT
TCAGATTCGGACTTACACTTGATTGTTAAGAGACAGACAATATTGTTCCC
CAACTTTTACCAATTATATCACCATGTTTTAGTAATAATGTGTGTGTGTG
TGTGTGTGTGTGTGCGCGTGTNTTNCTCCCTCCCNTTCCCCTTTTTTCCC
CCTTTCTCCTTTTCTCTCTCCCCCTTTCCTTTCTCTTCCCCCCCCCTTCC
CTTTCCTTTCTTTCTTTTCCCCCTTTTTTTTTCCTTTCTTTCCCTTCCCC
CTTTTTTCCCTCTTTTCTCCCTTCTTTTTCCCCCCTTTTTCTCCCCCTTT
CCCCCTTTTTTTCTTCTCCCTTTCCTTTTCCCTTCCCTTCCCCTTTCCCT
CCTTTCTTTTTCCCTCTTTTTTTCCCTTTCTTTTCCCCCTCTTTTTTTCC
TCCTTCCCCCCCCTTTTTTTTCCCCCCTTCCCCTCTTCGGCTTTTTCCCT
TTTCCGTTTCGTCTCCCCCTTTTCTTTCTCTGCTCTTCTTCGCCCTGCGT
TTTTTCCTTCTCTCTCGTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no152_p11.g1 MSMg01no152_p11.g1 CHROMAT_FILE:
MSMg01no152_p11.g1 PHD_FILE: MSMg01no152_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:13 2005
         (291 letters)



>mm_chr18_29341673_29342363
          Length = 691

 Score =  513 bits (265), Expect = e-150
 Identities = 280/285 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagaaaaggaacagagggcaggttgataagaaaacatgccagatatacatgagattctta 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 459 tagaaaaggaacagagggcaggttgatcagaaaacatgccagatatacatgagattctta 400

                                                                       
Query: 61  ataaaataaaatattgaagaaaagttcgatattcactatgaacttttcatatcagaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ataaaataaaatattgaagaaaagttcgatattcactatgaacttttcatatcagaatgg 340

                                                                       
Query: 121 gatttatgattcatagtcattcatattgtcatgaaaattaaatgcttaatttcagattcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 339 gatttatgattcatagtcattcatattgtcatgaaaattaaatgcttaattgcagattcg 280

                                                                       
Query: 181 gacttacacttgattgttaagagacagacaatattgttccccaacttttaccaattatat 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 279 gacttacacttgattgttaagagacagacaatattgttccccaactttcaccaattatat 220

                                                        
Query: 241 caccatgttttagtaataatgtgtgtgtgtgtgtgtgtgtgtgtg 285
           ||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 219 caccacgttttagtaataatatgtgtgtgtgtgtgtgtgtgtgtg 175


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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