BAC Information

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BAC

Clone NameMSMg01-153G23
Chromosome18 (Build37)
Map Location 89,931,509 - 89,931,865
singlet/doubletsinglet
Overlap geneDok6
Upstream geneLOC100040003, LOC623208, Socs6, Rttn, Cd226
Downstream geneLOC383320, LOC620693, Eif3s6-ps2, LOC665526, Txndc10, LOC666779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153G23.T7 (MSMg01no153_g23.b1)MSMg01-153G23.TJ (MSMg01no153_g23.g1)
ACCAG355035AG355036
length712714
length of high quality
(start - end)
---357 (69 - 425)
definitionCHROMAT_FILE: MSMg01no153_g23.b1 PHD_FILE: MSMg01no153_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:48 2005CHROMAT_FILE: MSMg01no153_g23.g1 PHD_FILE: MSMg01no153_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGCGGCGCTAAACGACTCCTATATTTCGAAGGCGCGCGGATTCCTA
GATTATTACCAAACTCTCTTATGGTGGGACTGCTATTAGATCCCTTTCTG
ATATCAAAACTGCTGTGAGAACTCTGTCAGTCTCCCATGTGTCAGCAGCT
AATTTCCTCTTAGATAGTACACAAATCAGTAGTTAATTGCCTCTTAGATA
GCAGCCCAAGGTCATAAAAAGGGAACTATCTATTATAGGTTGTATGACAG
AATATAAAATATTGATGGGGATTATATATACAAAACTTCCCTAATAATTT
AGTTATGGTTTTCATCTTTCAGTGAACCTGTGGAACTGTGACAGGAGATA
GATGTTTAGCCGGATAATTACTCCTAATGGACGTGTATGTAAACATTATC
TATTGTAAAGTTCTATCTCAATTTATGATTTGATTTTATGTGTGAAATTG
TGACGAACATGCGAACATGTCTTCCGAAAGACGTATAACCGTTGAGGACA
AAGATGAAAAAATTTCCCTTTCCCTGCTCAGGATCTTTCCACTTTCCCCC
TTAGATAGCTTCTGTAGAACATTTTTTACCGATTAGCAGTAACTACTATC
ATAATTTCTCAAAGTGCCTCTTTTTCTTCTTGCTAGCCGTTGGAGCTTCA
AAGTTCCTGTTGACATACACAAAACGTCAATTAATTTATCCCTCCACTGT
TGGCCCATGTGA
ACAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTCTCCCAAATCAGTAAAACTAGGAGAGAAAATACTTTGCACATG
CTCAAAAATTACGGCCACTATTAATGAGTCTAAAAATTGTGGAATAAAAC
AATAATTCAATATATATCTTCTGTTTCCAACAAAACACTATACATCATTC
AATTTGATGGGCAGACATAATAGTCTTATAACAAATTTGTGTAAAAATAA
ATGACCAAATATCTAAAAACCTAGCTAGTAGGGCTTTATATGGAAAGTTA
ATAAAAACATCCTCAGTCTATAATCCGTGGTCTTTGTGGGTAAAATTATG
AGAGTGCAAAGGAAAGAAAAGACAAGAAAAGGAAATGAAAGAAAAGAAAG
GAGATGGATGGAGGAAACTGTGTGGTAGATGGGTTGGGGATATAAATACA
GACAGGCTCAGGATCAGGTGTGGGGAGGTATAGAAGAGATAGCCAGATAG
ACATGCATTCTTTATCCCTGATCACTTTAGATAAAAATTCAGCTACATAC
CTAGAGCTATTTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCT
CTCTCCCTCTCTCTCTCTCTGTGTGCGTATGTGTGTGTGCGTGTGTATGT
ATGTACATGCATATGTGAGTTTCACTTCCACATTTCCAAAACTCCATGTC
TATTTAATATGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_g23.g1 MSMg01no153_g23.g1 CHROMAT_FILE:
MSMg01no153_g23.g1 PHD_FILE: MSMg01no153_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:48 2005
         (357 letters)



>mm_chr18_89931309_89932065
          Length = 757

 Score =  652 bits (337), Expect = 0.0
 Identities = 352/357 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaaaactaggagagaaaatactttgcacatgctcaaaaattacggccactattaatgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaaaactaggagagaaaatactttgcacatgctcaaaaattacggccactattaatgag 260

                                                                       
Query: 61  tctaaaaattgtggaataaaacaataattcaatatatatcttctgtttccaacaaaacac 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaaacattgtggaataaaacaataattcaatatatatcttctgtttccaacaaaacac 320

                                                                       
Query: 121 tatacatcattcaatttgatgggcagacataatagtcttataacaaatttgtgtaaaaat 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 tatacatcattcaatttgatgggcagacataattgtcttataacaaatttgtgtaaaaat 380

                                                                       
Query: 181 aaatgaccaaatatctaaaaacctagctagtagggctttatatggaaagttaataaaaac 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgaccgaatatctaaaaacctagctagtagggctttatatggaaagttaataaaaac 440

                                                                       
Query: 241 atcctcagtctataatccgtggtctttgtgggtaaaattatgagagtgcaaaggaaagaa 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcctcagtctagaatccgtggtctttgtgggtaaaattatgagagtgcaaaggaaagaa 500

                                                                    
Query: 301 aagacaagaaaaggaaatgaaagaaaagaaaggagatggatggaggaaactgtgtgg 357
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagataagaaaaggaaatgaaagaaaagaaaggagatggatggaggaaactgtgtgg 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)