BAC Information

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BAC

Clone NameMSMg01-153I20
Chromosome18 (Build37)
Map Location 87,791,725 - 87,792,351
singlet/doubletsinglet
Overlap genenone
Upstream geneCbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1
Downstream geneLOC329008, LOC100039961, LOC100039972, LOC623177
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153I20.T7 (MSMg01no153_i20.b1)MSMg01-153I20.TJ (MSMg01no153_i20.g1)
ACCAG355118AG355119
length721721
length of high quality
(start - end)
629 (63 - 691)441 (68 - 508)
definitionCHROMAT_FILE: MSMg01no153_i20.b1 PHD_FILE: MSMg01no153_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:57 2005CHROMAT_FILE: MSMg01no153_i20.g1 PHD_FILE: MSMg01no153_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:17:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGAATTCTCT
AAGTGTATCCGCCTGACCTTGAACTCATAGAGATCACAGGCATGTACCAC
CACCATCCAGCAGCTTTCTACTTTCTTATATGTATAATAATTTGATAAAT
TTTATAACAACTTCATTTTATTGTTGCTTCTTTCTTTTTCAATTTCATAT
GCTTAAAGTTCTACATAGCTAAGATATTTTTCTATTTTATTCAGTTTTGA
AAAGACTGACACAAAGAATTGACTTGGTATAAATACATGAACTGGAAGGT
CAATTAGCCTGATTTGAATCCTTATGCAGTAGAACAAATTAGTTGACTCA
CAGCAGTTCCTGTAGGAAAGTCATGACATTTGTTTTTGTACAGCATAGAT
GTCTATTGAATAGCAATTAAATATAAGTTAGAAAACTACCACTTAAGACT
TTCAACAGATCCTTTTTCTTAAATAACTGAACATTTAAGGCATTAACAGT
TCTCCGACTAGATTTTTGGATCATTTAAGTAAACCTTTCATAACTTTTCT
AAGGAGCTAATGAAGTCAACTGCCTGAGCTGATGCTGATATTCTAGATTA
GTATGTAATTTAATCTTAATATTTTTCTTCTTTTCGCTTCTTTCCTTTGT
TTAATTTCATGAGTTACATTCCCATACAGGTGACTTCCTATAACTATAGC
CCCATAAAATCTATGAACTCA
TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTGCGAATAACAAGAGTTCCAGCAGTTCTTTGCATAGTTTTGAGGACAAA
TCCTCTCCCCAACACCATCTACTCTGTCACATCTACCGTGTCATTTTTGT
TCAACTCATGTTTGGGCATCATGCTGGTAAGACTATATAGGTGTAGTTTC
TGACACTGCTAGTAGACCCAATGTCAGAGCAAACTCCCTGATTTTCTGGC
TTTTTCAATGTTTCCAAACCCTCTTCAGAAATATTCCCCAAACATTAAAT
GCAGGAGGTTTATTTTTATATTTGTTTATTTATTTATTTATTTATTTATT
TATTTATTCACATATATCCATTAGGACTAGACTCCACATTTCTGCAGTTC
ATTGACTTGCAGTCTTCTTAAATGGTCTCATCTGTTGACAATAGAAATAT
CCTTAATAAGGCATTACAGTTACCCTCACCTCTACATGTAAGGGCCAATA
TTTTGAGCACCAGTGGGTAATTATGTTAGTTTAGCAAAGTGGTAGCTATT
CTCCTCTAAGGTCCATGGTTGCACTAGATCAGATACTTGCTTAGGTTCCC
AGTGGCATCCATGACTTTCCTCTTAGTTAGTGCATCTTAAATCCAATTAG
AATGTTGTCTGTTACTTCTATATGTGTGCCGCTAAAAAACCCTTTTGGGT
AACATCCTTATGGCCATTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_i20.b1 MSMg01no153_i20.b1 CHROMAT_FILE:
MSMg01no153_i20.b1 PHD_FILE: MSMg01no153_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:17:57 2005
         (629 letters)



>mm_chr18_87791525_87792553
          Length = 1029

 Score = 1127 bits (583), Expect = 0.0
 Identities = 616/627 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgaccttgaactcatagagatcacaggcatgtaccaccaccatccagcagctttctact 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ctgaccttgaactcatagagatcacaggcatgtaccaccaccatccagaagctttctact 260

                                                                       
Query: 61  ttcttatatgtataataatttgataaattttataacaacttcattttattgttgcttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcttatatgtataataatttgataaattttataacaacttcattttattgttgcttctt 320

                                                                       
Query: 121 tctttttcaatttcatatgcttaaagttctacatagctaagatatttttctattttattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttttcaatttcatatgcttaaagttctacatagctaagatatttttctattttattc 380

                                                                       
Query: 181 agttttgaaaagactgacacaaagaattgacttggtataaatacatgaactggaaggtca 240
           |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 381 agttttgaaaagactgacacaaagaattgacttggtataaatacatcaactgaaaggtca 440

                                                                       
Query: 241 attagcctgatttgaatccttatgcagtagaacaaattagttgactcacagcagttcctg 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attaacctgatttgaatccttatgcagtagaacaaattagttgactcacagcagttcctg 500

                                                                       
Query: 301 taggaaagtcatgacatttgtttttgtacagcatagatgtctattgaatagcaattaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taggaaagtcatgacatttgtttttgtacagcatagatgtctattgaatagcaattaaat 560

                                                                       
Query: 361 ataagttagaaaactaccacttaagactttcaacagatcctttttcttaaataactgaac 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ataagttagaaaactatcacttaagactttcaacagatcctttttcttaaataactgaac 620

                                                                       
Query: 421 atttaaggcattaacagttctccgactagatttttggatcatttaagtaaacctttcata 480
           |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 621 atttaaggcattaacagttctctgactagatttttggatcatttaagtaagcctttcata 680

                                                                       
Query: 481 acttttctaaggagctaatgaagtcaactgcctgagctgatgctgatattctagattagt 540
           ||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||
Sbjct: 681 acttttctaaggagctaatgaagtcaactgcctgagctggtgctgatattctggaatagt 740

                                                                       
Query: 541 atgtaatttaatcttaatatttttcttcttttcgcttctttcctttgtttaatttcatga 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 741 atgtaatttaatcttaatatttttcttcttttcgcttctttcctttgtttaattccatga 800

                                      
Query: 601 gttacattcccatacaggtgacttcct 627
           |||||||||||||||||||||||||||
Sbjct: 801 gttacattcccatacaggtgacttcct 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)