BAC Information

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BAC

Clone NameMSMg01-155J03
Chromosome18 (Build37)
Map Location 84,137,813 - 84,138,122
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp516, LOC100041001, 4921531P14Rik, LOC665284
Downstream geneTshz1, Zadh2, LOC669856, Zfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155J03.T7 (MSMg01no155_j03.b1)MSMg01-155J03.TJ (MSMg01no155_j03.g1)
ACCAG356541AG356542
length736736
length of high quality
(start - end)
310 (117 - 426)313 (77 - 389)
definitionCHROMAT_FILE: MSMg01no155_j03.b1 PHD_FILE: MSMg01no155_j03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:30 2005CHROMAT_FILE: MSMg01no155_j03.g1 PHD_FILE: MSMg01no155_j03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACAAGCCTCAGCCACGACCCAGGGCAACAAGCTCCTCTCTCTCA
GCTCAGATTCAGGCCAGACTAAGCAACAGGAGAGCAGGCGCTTGAGGCTT
GAGTTCATCTCTGGGTGATCTGTCTCTAAAACAACTTGGTGGAGCCGGGG
ACCAAGGCAAGATTGTGCTTCACACAGGGTTCCAGTGGCACACAAGTTCA
CCATCTGGAAGTTTCCCGGCTCTAAGGGTCATCCCATTCTTCCCATCTTG
AACCCTGATACACAGACCACAAAGTGTTTATGTCCTTTCTTAGAATGGAG
AACTATGGATCCCTAACATTTATATGAACATTGAGTGTTGAGGGGTGTGG
AGGCAGGAAGGTTCCCAGAGCTCATGGGCAACCAATCTCTAATAGATGAG
CCACCTATAGGTTCAGTGAGAGGCCCCGTCTCACACATATGTCACAAGAG
ATAGAAGACTCTTACTGTCCAACTCTAGCCCCTTCACACAAGCCCCTCCC
ACAAAGACCCCACATGCACACACCTCTCTCCCTCTTCTCTCTCTCTCTCT
CTCTATCCATCTCTCTCTCTCTCTCTCTCTCTCTCACACACCCACACACA
CACACACACTCACATACAAATGGAGACACTTTTCCTCTTGATCCAGCCTT
TGGACCGCACAACGCTGCCATGCCTACCCTGTGTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACAGAATGGCT
GAGAAGCACCTGAAAAAATATTCCGCATCCTTAATCCTCAGGGAAATGCA
AATCAAAACAACCCTGAGATCCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAAGCTTATAAAACCACTCTGGAA
ATCAGTCTGGCGATTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CTGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTAGTAAG
AAAGAAACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCATCAGAGGAATGGATACAGAAAA
TGTGGTACGTTTACACAATGGAGTACTTCTCAACGATTAAAAGGAATGAA
TTTATGAAATTCCTTGGCCAATGGATGGACCCGGAGGACATCCTCCCGAG
TGAGGTAACCCAATCACCAAAGAACTCACATAACATGTACTCCCCTGATA
AGCGGATATTACCCCACACACTTACAATACCCCAGATATCCGATACCATT
TGCACAACACATGAAACTCCAGAAAATCCCAGACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_j03.b1 MSMg01no155_j03.b1 CHROMAT_FILE:
MSMg01no155_j03.b1 PHD_FILE: MSMg01no155_j03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:30 2005
         (310 letters)



>mm_chr18_84137613_84138322
          Length = 710

 Score =  584 bits (302), Expect = e-171
 Identities = 308/310 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gactaagcaacaggagagcaggcgcttgaggcttgagttcatctctgggtgatctgtctc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gactaagcagcaggagagcaggcgcttgaggcttgagttcatctctgggtgatctgtctc 451

                                                                       
Query: 61  taaaacaacttggtggagccggggaccaaggcaagattgtgcttcacacagggttccagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 taaaacaacttggtggagccggggaccaaggcaagattgtgcttcacacagggttccagt 391

                                                                       
Query: 121 ggcacacaagttcaccatctggaagtttcccggctctaagggtcatcccattcttcccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ggcacacaagttcaccatctggaagtttcccggctctaagggtcatcccattcttcccat 331

                                                                       
Query: 181 cttgaaccctgatacacagaccacaaagtgtttatgtcctttcttagaatggagaactat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 cttgaaccctgatacacagaccacaaagtgtttatgtcctttcttagaatggagaactat 271

                                                                       
Query: 241 ggatccctaacatttatatgaacattgagtgttgaggggtgtggaggcaggaaggttccc 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ggatccttaacatttatatgaacattgagtgttgaggggtgtggaggcaggaaggttccc 211

                     
Query: 301 agagctcatg 310
           ||||||||||
Sbjct: 210 agagctcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)