BAC Information

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BAC

Clone NameMSMg01-157G19
Chromosome18 (Build37)
Map Location 6,997,487 - 6,997,788
singlet/doubletsinglet
Overlap geneMkx
Upstream geneArhgap12, Kif5b, LOC100039469, EG621100, LOC665028, EG622152, Epc1, LOC665047, 4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635
Downstream geneLOC664778, Armc4, Mpp7, EG622384, LOC100039562, LOC100039606, Wac, LOC665121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-157G19.T7 (MSMg01no157_g19.b1)MSMg01-157G19.TJ (MSMg01no157_g19.g1)
ACCAG357908AG357909
length746746
length of high quality
(start - end)
321 (33 - 353)300 (60 - 359)
definitionCHROMAT_FILE: MSMg01no157_g19.b1 PHD_FILE: MSMg01no157_g19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:45 2005CHROMAT_FILE: MSMg01no157_g19.g1 PHD_FILE: MSMg01no157_g19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:22:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTGTAGC
AGAAAAAGTACTAAAACATATTTCCACCTTTTTCCTTCTAGGCTTCATGG
GAGATTAGGAAAAGCAGGTTTCACAATCTTCCTAAGCGGCATAAGAGGAG
CAAAGGAACTTAAAATTACTGTGTAGGAAGCCTGGCACACACTCAGAGGA
AAATGTTAAATGAAGAATAAGTGTCCAAACTTACGGCATCTTGTTGAGGA
ATAAAATAGTCTTGGGGGATAGATTGCTGCTATAAATCTTGAGGAAGAAG
CAAGAGAAGGCCCTGCAGTCAACATGACCCAAGGACTCAGAAAAAAAAGC
AGTTTTTCGTACCCGCCCGCCCGCATATGTATTCGTAGACAATTAAAGTG
AGTCCTACTTGAGCCTGGTCACCATCCTATAGGTATATCGTAGGGATAGT
GTGCTGCAGGGAATGAGCCGTGCTGTGGGGTGGACCCTGTGAGGAAGAGA
AGACCACTCTTCTCCAGAAGGCTGGCCCCACAGGAGAGAGTGACTCAGGA
CACAGAGTCTAATTCTCAGGTGTCAAACACTTGGCTCATCACGGTTCTTC
GCTTTGCCTCCAGAAGTGTAAAGTATTTGCATAATTGATGCAGTTTCTAA
AACTGGACTATGCTTTGGATGTTATTTTTGACTTACATAAATTCCTATAT
ATAAGAGCAGATAGCTGAATGTGTGGCTATATGTATGTGCACATGA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTGTTTACCTCTGTACCCCATTTTTTAGCTGTTTCCTGAG
AGGCTCTGCCAGTGCCTGACAAATACAGAAGTGGATGCTCACAGCCACAT
TGGACAGAGCACAAGGTCCCCAATGAAGGAGCTAGAGAAAGTACCCAAGG
AGCTGAAAGGGGTTTGCAGCCCCATAGGAGGAACAACAATATGAACTAAC
CAGTATCTCCAGAACTCCTATGGACTAAACTACCAACCAAAGAAAACACA
TGGTGGGATCATGGCTCTGGCTGCATATGTAGCAGAGTGTCTTAGTTAGG
GTTTTACTGCCGCGACCAGACAACATGACCAAGGCATGTTGCTTATAAAA
CGCAATGTTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTA
TCATCAAGTTGGGAGCATGGCAGTATCCAGGCAGGCATGGCGCAGGAGGA
GCTGAGAGTTCTGTGTCTTCATCCAAAGGCTGCTAGTGGAAGACTGACTT
CCAGGCAACTAGGGTGAGGATCTTATACACACCCACACAGTGACACACCC
ATTCCAACCAGGTCACACCTATTCCAACAAGGCCACACCTTCAGATGGTG
CCACTCCCTGGACCAAGGATATACAAACCATCACACAGAGGATGGCCTAG
TTGGTCATCAATGGTAGGAGAGGCCCTTGGTCCTGTGAAGATCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no157_g19.b1 MSMg01no157_g19.b1 CHROMAT_FILE:
MSMg01no157_g19.b1 PHD_FILE: MSMg01no157_g19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:22:45 2005
         (321 letters)



>mm_chr18_6997284_6998004
          Length = 721

 Score =  513 bits (265), Expect = e-150
 Identities = 297/317 (93%), Gaps = 15/317 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtgtagcagaaaaagtactaaaacatatttccacctttttccttctaggctt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtgtagcagaaaaagtactaaaacatatttccacctttttccttctaggctt 263

                                                                       
Query: 64  catgggagattaggaaaagcaggtttcacaatcttcctaagcggcataagaggagcaaag 123
           |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 264 catgggagattaggaaaagcaggtttcacaatcttcctcagcagcataagaggagcaaag 323

                                                                       
Query: 124 gaacttaaaattactgtgtaggaagcctggcacacactcagaggaaaatgttaaatgaag 183
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 324 gaacttaaaattactgtgtaggaagcctggcacacacacagaggaaaatgttaaatgaag 383

                                                                       
Query: 184 aataagtgtccaaacttacggcatcttgttgaggaataaaatagtcttgggggatagatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aataagtgtccaaacttacggcatcttgttgaggaataaaatagtcttgggggatagatt 443

                                                                       
Query: 244 gctgctataaatcttgaggaagaagcaagagaaggccctgcagtcaacatgacccaagga 303
           |||||||||||||||||||||||||||               |||||||||| |||||||
Sbjct: 444 gctgctataaatcttgaggaagaagca---------------gtcaacatgatccaagga 488

                            
Query: 304 ctcagaaaaaaaagcag 320
           ||||| |||||||||||
Sbjct: 489 ctcaggaaaaaaagcag 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)