BAC Information

Click to search

BAC

Clone NameMSMg01-158P21
Chromosome18 (Build37)
Map Location 61,669,691 - 61,821,413
singlet/doubletdoublet
Overlap geneCsnk1a1
Upstream geneDctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik
Downstream geneIl17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2, Htr4, Fbxo38, Spink10, EG408198
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158P21.T7 (MSMg01no158_p21.b1)MSMg01-158P21.TJ (MSMg01no158_p21.g1)
ACCAG359051AG359052
length751760
length of high quality
(start - end)
320 (46 - 365)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no158_p21.b1 PHD_FILE: MSMg01no158_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:37 2005CHROMAT_FILE: MSMg01no158_p21.g1 PHD_FILE: MSMg01no158_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,821,099 - 61,821,413)(61,669,691 - 61,669,975)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATCTTCTTGGATACTAAGGAATAATATGCTTTTGTTCCTTCACA
AGTAACAATTCTTAACACAATACACGTGTCTGTCATGGCAGCTCACAGGA
GGTAGAGAATGGAAGATCAGGAATTCATGGCCATACTTAGCTACTCAGTG
AGCTTAAGGCCAGCCTGGGCTACATGGGATCCTGTCTCAGAAAACAGTTG
TCACACTGGGGATGTGTTAGCTCACAGTACTATGTTAGAGCGCTTGCTAG
GCTCCAGGTCATGTGTTCTGTTTCCATCATGTCCATCTCTTACATAACCC
AAATTGCTATGTATTAGGTTTTTTCTGCCCCACCCCCCGAGGTAAGTACC
TTCATCNTTTGCGTAAGTCCCCCGCCCCCAGAGAAAGAACAGATCATTTG
CTCAAAGCCAGACAGGCTAATACGCAAAATTGGGACTCTACTCCAAATCT
GGCTTAGCTGCTATTTTCGAGAACCAGCTACGGCTATGAATCTGAATCAG
CCTCAGCACTCACCTTCTTTACGGGCCACCCGATATTTTGGGAGGAAGCT
ATGCGCCTTCTAGATTAAGAATAATTACGCTGACCGAATAAAAAGAGTCC
CCTCACCCCCACCGCTTCCACTCTCAATTACAGCCCCAGCTGAGGGCAGA
ACATGCCAGATCCTCGCTCGACCACTCTCAGGCCCATCTGTTGCCCGCTC
T
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCTAACTTGTCCCAGTGCGCCTCCTA
CAAGAATCACAAGTGTTCCTAAGGGCCAGCCTCCGGGGCCCTGTAACAGA
GTCAAGTCCTTCCTAAGGAAAACTCTTCAGACCAAATGTTCAGAAAAGAA
ACAGCTCAGAGGCTAAGAATAGACATAGCAGGTGGGAGCCCAAGGGGGGC
AACGGGTGGACTTCACCTGGACCGGCCATCTGCTCTCCCTAAGGGTGTCC
TGAGCTCAGATAACTGTGGGCGGGTATTTTGGGAACTTCATTCTAGGCTA
ACATTCCATTGTTTTTACCCACCCGCCCCCCAGGGACAACTGTCACCATA
GTACAAACCAGACCCCCACGAGTCCTTAAAGAGATGACTGCATTTTTTTT
TTAATGTCACCAAGGAATCAGTACAGAATGGGGGAAGCCACTCACTCACA
TTTGTGGCTTTCTTAAAATAGAACAGAGGAAAACTGTATGCAGCATCTCA
TACAGATGATAGGAATGGAAGGACAACACAGAAGGCTGAGGGAGTTTGAC
AGAACACAGCTTCTTACATTCTCTCGGGAGTGCCACTGGCTGAGATCTGG
GACAGTTGGGCAATATTTTTGAAACATACCTTTGCTCTACCACCCCCAGC
CTAAGATTCTACGCACAGAAATCTTGGCTCAAGCAAATCAGGTTAGAGGT
TAAGTTGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_p21.b1 MSMg01no158_p21.b1 CHROMAT_FILE:
MSMg01no158_p21.b1 PHD_FILE: MSMg01no158_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:37 2005
         (320 letters)



>mm_chr18_61820700_61821419
          Length = 720

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatcttcttggatactaaggaataatatgcttttgttccttcacaagtaacaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 gaattctatcttcttggatactaaggaataatatgcttttgttccttcacaagtaacaat 655

                                                                       
Query: 65  tcttaacacaatacacgtgtctgtcatggcagctcacaggaggtagagaatggaagatca 124
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 654 tcttaacacaatacacgtgtctgtcatggcagctctcaggaggtagagaatggaagatca 595

                                                                       
Query: 125 ggaattcatggccatacttagctactcagtgagcttaaggccagcctgggctacatggga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ggaattcatggccatacttagctactcagtgagcttaaggccagcctgggctacatggga 535

                                                                       
Query: 185 tcctgtctcagaaaacagttgtcacactggggatgtgttagctcacagtactatgttaga 244
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 534 tcctgtctcagaaaacagttgtcacactggggatgtgttagctcacggtactatgttaga 475

                                                                       
Query: 245 gcgcttgctaggctccaggtcatgtgttctgtttccatcatgtccatctcttacataacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gcgcttgctaggctccaggtcatgtgttctgtttccatcatgtccatctcttacataacc 415

                          
Query: 305 caaattgctatgtat 319
           |||||||||||||||
Sbjct: 414 caaattgctatgtat 400


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no158_p21.g1 MSMg01no158_p21.g1 CHROMAT_FILE:
MSMg01no158_p21.g1 PHD_FILE: MSMg01no158_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:37 2005
         (288 letters)



>mm_chr18_61669491_61670178
          Length = 688

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctaacttgtcccagtgcgcctcctacaagaatcacaagtgttcctaagggccagcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctaacttgtcccagtgcgcctcctacaagaatcacaagtgttcctaagggccagcctc 260

                                                                       
Query: 61  cggggccctgtaacagagtcaagtccttcctaaggaaaactcttcagaccaaatgttcag 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggggccctgtaacagagtcaagtccttcctaaggaaaactcttcagaccaaatgttcag 320

                                                                       
Query: 121 aaaagaaacagctcagaggctaagaatagacatagcaggtgggagcccaaggggggcaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagaaacagctcagaggctaagaatagacatagcaggtgggagcccaaggggggcaac 380

                                                                       
Query: 181 gggtggacttcacctggaccggccatctgctctccctaagggtgtcctgagctcagataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtggacttcacctggaccggccatctgctctccctaagggtgtcctgagctcagataa 440

                                                        
Query: 241 ctgtgggcgggtattttgggaacttcattctaggctaacattcca 285
           ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtgggtgggtattttgggaacttcattctaggctaacattcca 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)