Query= MSMg01no159_a24.b1 MSMg01no159_a24.b1 CHROMAT_FILE:
MSMg01no159_a24.b1 PHD_FILE: MSMg01no159_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:42 2005
(612 letters)
>mm_chr18_44427425_44428440
Length = 1016
Score = 598 bits (309), Expect = e-175
Identities = 346/367 (94%), Gaps = 16/367 (4%)
Strand = Plus / Minus
Query: 251 caaaa-ccctcctttttgtaactggctctctgatgtacccattaatgtgttttaaacttg 309
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1016 caaaacccctcctttttgtaactgactctctgatgtacccattaatgtgttttaaacttg 957
Query: 310 ccttgatttatgaatttctttgttctgccactaaaagacctcatgagacatcttccacat 369
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 956 ccttgatttatgaatttctttgttctgccactaaaagacctcatgagacatattccacat 897
Query: 370 ggaaacatgaaaccaggataacctagttccatgttttatgggtcacagtactcaaatttg 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 ggaaacatgaaaccaggataacctagttccatgttttatgggtcacagtactcaaatttg 837
Query: 430 gctctggagtaaactacctcttcttttcttgttttttttttttttgaggtgagtgcc--- 486
|||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 836 gctctggagtaaactacctctt-----------ttttttttttttgaggtgagtgccatc 788
Query: 487 -cccctttctctctgtgtgtgaatgtttatgtacaatgagtaaactaggcaatagggaag 545
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 787 ccccctttctctctgtgtgtgaatgtttatgtacaatgagtaaactaggcaataaggaag 728
Query: 546 atgagatggatttgctggcattctgttctttgtagctttaggaactacagagagagccca 605
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 atgagatgaatttgctggcattctgttctttgtagctttaggaactacagagagagccca 668
Query: 606 agataga 612
|| ||||
Sbjct: 667 aggtaga 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1016
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1006
Effective search space: 605612
Effective search space used: 605612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no159_a24.g1 MSMg01no159_a24.g1 CHROMAT_FILE:
MSMg01no159_a24.g1 PHD_FILE: MSMg01no159_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:42 2005
(515 letters)
>mm_chr18_44362512_44363426
Length = 915
Score = 973 bits (503), Expect = 0.0
Identities = 512/515 (99%)
Strand = Plus / Plus
Query: 1 tctttttgtgcctagaagaggatgcataaggaaaaggaaatgatggtgtctttaaaagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttttgtgcctagaagaggatgcataaggaaaaggaaatgatggtgtctttaaaagaa 260
Query: 61 gatttgtgatacaataagcaaccaataagtgccatttttatatttgaaatcagtcactct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatttgtgatacaataagcaaccaataagtgccatttttatatttgaaatcagtcactct 320
Query: 121 atgaatacaatattttaataatctattcaaacatctttgtttctaatatcacaagagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaatacaatattttaataatctattcaaacatctttgtttctaatatcacaagagaaa 380
Query: 181 ggaattgcataggtcacttatagatattatgaatatttcccaccatagactctttacact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaattgcataggtcacttatagatattatgaatatttcccaccatagactctttacact 440
Query: 241 tttttacattgtttattcatataatttgtagagatggctgtgttcatatattccacagtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttacattgtttattcatataatttgtagagatggctgtgttcatatattccacagtg 500
Query: 301 catatgttcaagtcagaggactaattttgggagttcattttctctttccactatgaggaa 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatatgttcaagtcagaggactaattttgggagttcattttctctttccactatgaggaa 560
Query: 361 actagaacattgaactcagcttctcaggccaatgcccaaactaccacatttctttctctt 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 actagaacattgaactcagcttctcaggccaatgtccaaactaccacatttctttctctt 620
Query: 421 attcttatatattttctttcttggacctctttattggttgcagagactgctgttgcacat 480
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 attcttatatattttctttcttgtacctctttattggttgcagagactgctgttgcacat 680
Query: 481 ctaaggtataccatacgaaaggtaaatgaatacta 515
|||||||||||||||||||||||||||||||||||
Sbjct: 681 ctaaggtataccatacgaaaggtaaatgaatacta 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space: 457025
Effective search space used: 457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
