BAC Information

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BAC

Clone NameMSMg01-160C07
Chromosome18 (Build37)
Map Location 89,700,990 - 89,701,300
singlet/doubletsinglet
Overlap geneDok6
Upstream geneLOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226
Downstream geneLOC383320, LOC620693, Eif3s6-ps2, LOC665526, Txndc10, LOC666779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160C07.T7 (MSMg01no160_c07.b1)MSMg01-160C07.TJ (MSMg01no160_c07.g1)
ACCAG359893AG359894
length744794
length of high quality
(start - end)
317 (39 - 355)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no160_c07.b1 PHD_FILE: MSMg01no160_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:01 2005CHROMAT_FILE: MSMg01no160_c07.g1 PHD_FILE: MSMg01no160_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
CAAAAATTTGTAATATCCAATGCAATATATTCAGTCAAAATACAATTTGA
CCATTCAACAATGAACAAAGAAAACCAAAATTATGCCTGGAGCACTGGGA
TAGAAATGAATATAATGATTAATGATTTGTGCAACTTGGGGCACATTTTC
CTCAAGAAGAATTACAGTGCTACCCCATTATTATAATTTCATTTTTTATA
GTACTTTACATTGCAATAGCAATGTTTTTATACTAAGCTTAGCCCTTTGG
CTATACTCTGGCAGTCTATTTGTGTTTTGATTTCATGAAAACAAATAACT
GATATGATTAACATCCCGCTTTCATTATTCATGCAAAAAAGGTTTAAAGT
AAAATAGGCCCCCACATAAATGCTACTGAATTATTTTTAATTCAAAGAAG
CTATTCATTTTTCTGATTTTGATTCCTTTCTTCCTCCTTCCTTTTTTTTC
CTTCACCCCACCGTGCTCCCAAAGAAATAAAGTATCAAAGAATCCAAAGT
CTATTTTCTATGATTTTGAAATAAAACAATTAGGTTAGGTTTTGGTTCTT
TTCCTGGCAGCTATATGCTGATGTGCAGCACAGGAATTTATGCACAGAGC
AAAACTGCAATTGGCTATTCAAGTTTCAGGAAACTGTGGAAGACAAAGCA
AGATCCTGTGGATCAGGAAATAAACAACAACCAAAAAATGTCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTATCA
TGAATGGGTGTTGGATCTTGTCGAATGCTTTTTCTGAATCTAACGAGATG
ATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGAT
GGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCCACTT
GGTCAGTATGGATGATTTCTTTAATGTGTTCTTGGATTCGGTTATTCAGA
ATTTTATTGAGTATTTTTGCATCGATATTCATAAGGGAAATTGGTCTGAA
GTTCTCTATTTTTTTTGCACCCCCCCCCCCGCCTTAGGTATTCGAGTAAC
TGTGGCTTCATAGACCCCCCCGAAAAAAGATTCATCTACTTCTATTTTGT
GGAATAGTTTGTGCACAACTGGAATTACATCTTCTTTTAAGGTCTGGTAG
AACTCAGTACTAACCCCATCTGGTCCTGTGCTTTTTTTTTTGTCTGCTCG
CACTATCAATGACTGCTTCTATCTTCTTCTCCGTTATATGTTTTTCTTTT
CCCCCCTTTACTATTTTTCTTTATTTTACTTTCCTTATTTTGTTATCTAG
TTCACCCTCTTATCTCCCTTTTTTCTTAAATTATATTTCCATTTATTTAG
TATACTTCATTTATCCATTCTACACTCATTTTTTTACTCCTCAGCCTCTT
CCTTCTCTTCCCTTTTTACCACTTTCCTCCTCTTCTTCTTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_c07.b1 MSMg01no160_c07.b1 CHROMAT_FILE:
MSMg01no160_c07.b1 PHD_FILE: MSMg01no160_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:01 2005
         (317 letters)



>mm_chr18_89700787_89701503
          Length = 717

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaacaaaaatttgtaatatccaatgcaatatattcagtcaaaatacaatttgac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaacaaaaatttgtaatatccaatgcaatatattcagtcaaaatacaatttgac 263

                                                                       
Query: 64  cattcaacaatgaacaaagaaaaccaaaattatgcctggagcactgggatagaaatgaat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cattcaacaatgaacaaagaaaaccaaaattatgcctggagcactgggatagaaatgaat 323

                                                                       
Query: 124 ataatgattaatgatttgtgcaacttggggcacattttcctcaagaagaattacagtgct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ataatgattaatgatttgtgcaacttggggcacattttcctcaagaagaattacagtgct 383

                                                                       
Query: 184 accccattattataatttcattttttatagtactttacattgcaatagcaatgtttttat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 accccattattataatttcattttttatagtactttacattgcaatagcaatgtttttat 443

                                                                       
Query: 244 actaagcttagccctttggctatactctggcagtctatttgtgttttgatttcatgaaaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actaagcttagccctttggctatactctggcagtctatttgtgttttgatttcatgaaaa 503

                      
Query: 304 caaataactga 314
           |||||||||||
Sbjct: 504 caaataactga 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)