BAC Information

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BAC

Clone NameMSMg01-161C09
Chromosome18 (Build37)
Map Location 20,466,973 - 20,467,380
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665624, LOC665629, Dsc3, Dsc2, Dsc1, Dsg1c
Downstream geneDsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161C09.T7 (MSMg01no161_c09.b1)MSMg01-161C09.TJ (MSMg01no161_c09.g1)
ACCAG360629AG360630
length1,2081,298
length of high quality
(start - end)
424 (28 - 451)385 (72 - 456)
definitionCHROMAT_FILE: MSMg01no161_c09.b1 PHD_FILE: MSMg01no161_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:26 2005CHROMAT_FILE: MSMg01no161_c09.g1 PHD_FILE: MSMg01no161_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:26 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNGGGCTATGGGCCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCC
CTTAGTCATTGGCCCACACCCTTTTCCTGACTCTGTACCACTCTCTGGTC
CTGATGCTAAGGAGTGAAGCTCTCATGATAGAAACCGTGTAAGCCTTCTC
ACTCTCCTTACAAGTTCTCGAGTCTTTCCAAGGTCTTTGCTCTGTAGCCC
CTTCCTTACCTTGGTGTAACTGGGACTCAGTCTGTACCTGTCTATCTCCA
CACACCTCAAACCTCCCCTCAGTCCTGGTCACTATGTATATCAATTCTCA
TTTCATAGGAATTTTCATGAAATTTGGCAGGGGAGAGGGTAATTTTGAGT
TGGAGTTTCCCGAGTGAACTGACCAAATCGGTCAATGGAACTTCCCTTTT
CTTGACAATACACGGTAAACCCTGGATGTCACCCCAAAGAGATGGCATTT
TTTTTTTCCCCCCCCCACTCAGAATAGTGTAACACTAACAAGGAACACTA
GCAAATCCTTAAGGCTAATAGATTCTGCTAAGCTAGATTGTTGTTGGCAT
AATCTATGGAATTTACTGTTTATCTGACCTCTTTTTCAGAGACCCAGAGC
CGACCCTCACATTTCAGAAAAACATTTGAGAATATACTACATTGATGTAT
GTGAACCTCTAGCTTCACTATGTGTCAAAATTACCTTACCCAGCCCTACA
TGTTATACTATAGAGGACAGATGAGGGGATTTCAACCACAGCACTGCATA
AATGCCATCAATGGTGCAGGCCTGCAATCCTGAGCTAGGAGATAGACAAA
GGAGGACAGACATTCTATGTCATTCTCAGCTTCAGAAAGAACTTGAGGTC
AATATATAAAATTTGTTTTACATCTGGAATAAATTTCCAGTGACATAAAG
GGTCATAATGCTTGAAATGATTGGGGAAACCCTTCATGAAATACTGGCCC
TATAAGAAAAATACCCGAAAAAATGGTGGCCTGGCCTTTAATAAAAAAAA
AATTTTTTTCTTTTTTTTTAAAAAAAAAAGAAAGGGGGGGTTTATTTTTT
AATAAAATAGGTGGGGGCGCACAAAACAACCCTTGTATATAANTTATTTT
AGAATGTTTTAGGGCAATTTTTTAACCGTGATTTCCTTATTAAATTATTT
TTCTAGGAGTTTCCTCAGGGTAGCGCCCCAATATAATAAAAATTTTTTTT
TTTCCCAA
NNCCAAGAGGGNTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAATGTTCAACATCCTTAGTCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAAATGCTGGCGTGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAG
TCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCTCCAACTGGTAAGAAGGA
CACTTGTTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAATTTTTTTCCCCCCCCCCCCACCAGAGGAATGGATACAGAAAAAGAG
GGAGATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTACTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGG
ATATTAGCCCCAAACCTAGGATTCCCAAGATATAAGATACAATTTGCTAA
ACACATGAAACTCAAAAAGAATGAAGACTGAAGTGTGGACACTATGCCCC
TCCTTAGATTTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAG
TTTGGAGCTGAGATGAAAGGACGGACCATGTAGAGACTGCCGTATCCAGG
GATCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCTTACACTAG
CAAGATTTTATTGAAAGGAACCAGATGTAGCTGTCTCTTGTGAGAACATG
CCGGGGCCCTATCAAACCCAGAAGGTGGATGCTTCCCAGTCCAGCTTATG
GGATGGGATCTAAGGGCTTCCCAATGGGAGGAGTTTTGAGAAAGATCCCC
CGGGAGCTTAAGGGGATTTGTCAACCCCTTTGGGGGGAAACAACTTTTTG
AACTATACTCTTACCCCCGGGAGAACTTTGATCTTTACCTGCATAATAAA
TACAAAAGAAGGGCCTTATCGGCCCTCTCACTGGGAAAATAAAAGCACCC
TTGTCACTGTGTACCATTCTATGTGCCTCCTTCCCGCGGGGAATACACCT
GGTCTCCATAAATAGTGTAATTGTTTGTGTCTGTACTACATAGTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_c09.b1 MSMg01no161_c09.b1 CHROMAT_FILE:
MSMg01no161_c09.b1 PHD_FILE: MSMg01no161_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:26 2005
         (424 letters)



>mm_chr18_20466757_20467581
          Length = 825

 Score =  675 bits (349), Expect = 0.0
 Identities = 394/409 (96%), Gaps = 3/409 (0%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattcccttagtcattgg-cccacacccttttcctgactctgtaccactctctggtcct 75
           ||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 624 gaattccctcagtca-tggtcccagacccttttcctgactctgtaccactctctggtcct 566

                                                                       
Query: 76  gatgctaaggagtgaagctctcatgatagaaaccgtgtaagccttctcactctccttaca 135
           |||||| |||||||||||||||||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 565 gatgctgaggagtgaagctctcatgataggaactgtgtaagtcttctcactctccttaca 506

                                                                       
Query: 136 agttctcgagtctttccaaggtctttgctctgtagccccttccttaccttggtgtaactg 195
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 505 agttctcgagtctttccaaggtctttgctctgcagccccttccttaccttggtgtaactg 446

                                                                       
Query: 196 ggactcagtctgtacctgtctatctccacacacctcaaacctcccctcagtcctggtcac 255
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 ggactcagtctgtacctgtccatctccacacacctcaaacctcccctcagtcctggtctc 386

                                                                       
Query: 256 tatgtatatcaattctcatttcataggaattttcatgaaatttggcaggggagagggtaa 315
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 385 tatgtatatcaattctcatttcataggaattttcatgaaatttggcaggggaaagggtaa 326

                                                                       
Query: 316 ttttgagttggagtttcccgagtgaactgaccaaatcggtcaatggaacttccc-ttttc 374
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 ttttgagttggagtttcccgagtgaactgaccaaatcggtcaatggaacttccccttttc 266

                                                            
Query: 375 ttgacaatacacggtaaaccctggatgtcaccccaaagagatggcattt 423
           ||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 265 ttgacaatacatggtaaaccctggatgtcaccccaaagggatggcattt 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 825
Length adjustment: 9
Effective length of query: 415
Effective length of database: 816
Effective search space:   338640
Effective search space used:   338640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)