BAC Information

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BAC

Clone NameMSMg01-162N07
Chromosome18 (Build37)
Map Location 4,559,243 - 4,559,388
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354
Downstream geneLOC433157, 9430020K01Rik, LOC268988, Svil, Zfp438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162N07.T7 (MSMg01no162_n07.b1)MSMg01-162N07.TJ (MSMg01no162_n07.g1)
ACCAG361835AG361836
length729728
length of high quality
(start - end)
320 (44 - 363)289 (78 - 366)
definitionCHROMAT_FILE: MSMg01no162_n07.b1 PHD_FILE: MSMg01no162_n07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:17 2005CHROMAT_FILE: MSMg01no162_n07.g1 PHD_FILE: MSMg01no162_n07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCGGTGGAGTTTTTAGGGTCACATAAACATACTATCATATCATCTG
CAAATAGTGATATTTTGACTTCTTTTCCAATTTGTATCCCCTTGAACTCT
TTTTGTTGTCGAATTGCTCTGGCTAGGACTTCAAGTACAATGTTGAATAG
GTAGGGAGAGAGTGGACAGCCTTGTCTAGTCCCTGATTTTAGTGGGATTG
CTTTGAATGTCTCTCCATTTAGTTTGATGTTGGCTACTGATTTGCTGTAG
GTTGCTTTTATTATGTTTAGGTATGGGCCTTGAATTCTTGATCTTTCCAA
GACTTTAATCATGTTTTTGTGTTGCACCTCCCCAAATGCTTTCTCAGCAT
CTGAGATGATCATGTGATTTTTGTCTTTAAGAATGTTTATATAGTGGATT
ACATTGATGGATTTCCATATACTAAACCATCCCTGCATCTCTGGAATAAA
GCCTACTTGGTCATGATGGATGATCATTTTAATGTGTTCTTGGATTCGGT
TTGCAAGGATTTTATTGAGTATCTTTGCATCGTTATTCATAAGGGAAATT
GGTCTGAAGTTCTCTTTCTTTGTTTGATCTTTGTGTGATTTAGGTATCAG
AGTAATTGTGGCTTCATATGATGAATTGGGTAGAGCATGTTCTGTTTCTA
TTTTGTGGAATAGCTTGAGGAGAGTTGGA
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTGAGAACAGACAGGGTGAT
TCCAGAGTAACTGTGCAATAAGATCAGGAAGCCCTTTTGATTGAAAATAA
AAGACAACAACAAACCAAACCAAAGAACTGCGAATTACACCAAGATGCTC
AAAAACGCTGGGCTCCCTGTTTTCCCTGCCTGCATCCCCTCCTCCATGTC
ACACTCATTTCTTCAGGCCAGAGCCCAGTCCAGCCTTCATCCAGTCTCTG
CTCCAGCAGGAAGCATAGAAGAAGGGAGGTAACCAGCCTCTGTGCTCTCC
CAGTCCTATTTGGTATCCAAAGCCGACCTGCCCGGTGGCATCAGCTTGAG
AACAGAGGCACCTCAGCTCTCCCCACTTTTGCCTCCAGGTAAAGCGAATT
CATGGGTAAGCTTAGACTCCAGAACAGGCAGAGGACAGACTGAGGTAGAG
ACAGGATGATCTGGGGTCTGCATCTCATAGCAATAAACAATAACTGCCAT
GCCTGGTGGCACCACTAAATTAATGCAAAGATATGGAACCAAAACAAACT
CTTTGGGCTGGCAAGATGGCTCAGTGGGTAAAGGAGCTTGCCACAAAGCT
TGGCAACCTAAGTTTGATCTCTGATATCAACAAGATAGAAGGAGAAAACT
GACTTTTGCAAATTGTCCTCTGACTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_n07.g1 MSMg01no162_n07.g1 CHROMAT_FILE:
MSMg01no162_n07.g1 PHD_FILE: MSMg01no162_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:18 2005
         (289 letters)



>mm_chr18_4558901_4559589
          Length = 689

 Score =  275 bits (142), Expect = 3e-78
 Identities = 145/146 (99%)
 Strand = Plus / Plus

                                                                       
Query: 143 ttttccctgcctgcatcccctcctccatgtcacactcatttcttcaggccagagcccagt 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttttccctgcctgcatcccctcctccatgtcacactcatttcttcaggccagagcccagt 402

                                                                       
Query: 203 ccagccttcatccagtctctgctccagcaggaagcatagaagaagggaggtaaccagcct 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ccagccttcatccagtctctgctccagcaggaagcatagaagaagggaggtaaccagcct 462

                                     
Query: 263 ctgtgctctcccagtcctatttggta 288
           |||||||||||||||| |||||||||
Sbjct: 463 ctgtgctctcccagtcttatttggta 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)