Query= MSMg01no162_o18.b1 MSMg01no162_o18.b1 CHROMAT_FILE:
MSMg01no162_o18.b1 PHD_FILE: MSMg01no162_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:24 2005
(309 letters)
>mm_chr18_83755288_83755996
Length = 709
Score = 499 bits (258), Expect = e-146
Identities = 291/302 (96%)
Strand = Plus / Minus
Query: 5 gaattctatcatctcttcaatttccgttttcaggaatgctttgtttttcatgtttttctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gaattctatcatctcttcaatttccgttttcaggaatgctttgtttttcatgtttttctt 298
Query: 65 ttgtaatcctctgtgatatttttgcaagagaaggtgtgcaccaaattcttcctctcatat 124
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 297 ttgtaatcatctgtgatatttttgcaagagaaaatgtgcaccaaattcttcctctcatat 238
Query: 125 ttactggcaagagtagtctacccatgcttccatatccatccatctgtacatatccaccca 184
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 237 ttactggcaagagtagtttacccacgcttccatatccatccatctgtacatatccaccca 178
Query: 185 accatctattcattcacacatccattcatccatctattcatcatccacccagccacccat 244
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 177 accatctattcattcacacatccattcatccatctattcatcatccacccatccacccat 118
Query: 245 ccatctatccatcatctatctattcttcatccatccttcaatccatccacccatccacct 304
||||||||||||||||||||||||| |||||||||||||||| || ||| | ||||||||
Sbjct: 117 ccatctatccatcatctatctattcatcatccatccttcaattcaaccaactatccacct 58
Query: 305 at 306
||
Sbjct: 57 at 56
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no162_o18.g1 MSMg01no162_o18.g1 CHROMAT_FILE:
MSMg01no162_o18.g1 PHD_FILE: MSMg01no162_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:24 2005
(277 letters)
>mm_chr18_83603059_83603735
Length = 677
Score = 485 bits (251), Expect = e-142
Identities = 268/279 (96%), Gaps = 10/279 (3%)
Strand = Plus / Plus
Query: 1 aaatctaaaaactagagtttgaaaactgtttgtagccaacacatgtggaggggttgttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatctaaaaactagagtttgaaaactgtttgtagccaacacatgtggaggggttgttct 260
Query: 61 gtttctctctcactgtggcacacggttgagaagagaaaccacagtttccagtaagtgact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttctctctcactgtggcacacggttgagaagagaaaccacagtttccagtaagtgact 320
Query: 121 gaaggtgctggtccactaaggctcaccctcagaagagctcagcctgcctggtttcctttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaggtgctggtccactaaggctcaccctcagaagagctcagcctgcctggtttcctttc 380
Query: 181 tgctccagagaaagtggctctctcatttgcatccacttcctaggatttcctccaggtttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctccagagaaagtggctctctcatttgcatccacttcctaggatttcctccagg---- 436
Query: 241 tc-----ccaggagccaaccacccgcagacacagaaagg 274
| |||||||||||||||| |||||||||||||||
Sbjct: 437 -caagccccaggagccaaccacctgcagacacagaaagg 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space: 179024
Effective search space used: 179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
