Query= MSMg01no164_l19.b1 MSMg01no164_l19.b1 CHROMAT_FILE:
MSMg01no164_l19.b1 PHD_FILE: MSMg01no164_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:40 2005
(320 letters)
>mm_chr18_5380478_5381196
Length = 719
Score = 588 bits (304), Expect = e-172
Identities = 313/316 (99%), Gaps = 1/316 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagagaattgaggtgtggatcattcagaatccatgcgaaagtagaatgagcaga 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggaattcagagaattgaggtgtggatcattcagaatccatgcgaaagtagaatgagcaga 459
Query: 64 catcttatttagaatgattgatggcccctgctgagatgagcaagtgtggaaaacatatgc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 catcttatttagaatgattgatggcccctgctgagatgagcaagtgtggaaaacatatgc 399
Query: 124 cacctggttttgtgttttggctgccagatggcgcctcaccccacccagccctgggctgtc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 cacctggttttgtgttttggctgccagatggcgcctcaccccacccagccctgggctgtc 339
Query: 184 cctcctgcctaccagctcagtcccctccttgccccactccctctccattccctatactcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cctcctgcctaccagctcagtcccctccttgccccactccctctccattccctatactcc 279
Query: 244 actctcctctctggcagggggtgggcagtgatgtatgaggcccatgtgtactcagcacgt 303
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 278 actctcctctctggc-ggggttgggcagtgatgtatgaggcccatgtgtactcagcacat 220
Query: 304 tattgaataaaacaaa 319
||||||||||||||||
Sbjct: 219 tattgaataaaacaaa 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 719
Length adjustment: 9
Effective length of query: 311
Effective length of database: 710
Effective search space: 220810
Effective search space used: 220810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no164_l19.g1 MSMg01no164_l19.g1 CHROMAT_FILE:
MSMg01no164_l19.g1 PHD_FILE: MSMg01no164_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:40 2005
(292 letters)
>mm_chr18_5239101_5239794
Length = 694
Score = 511 bits (264), Expect = e-149
Identities = 284/292 (97%), Gaps = 4/292 (1%)
Strand = Plus / Plus
Query: 4 gattgggtcttcagcaaagaccaagggggaagttcctagggattctaagtgtctaggaga 63
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 204 gattgggtcttcagcaaagaccaaggggaaagttcctagggattctaagtgtctaggaga 263
Query: 64 ctccagggggcttcctctggaggctggaaaccaaacttatgtaagagctcagagacagca 123
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 264 ctccagggggcttcctctggaggctgaaaaccaaacttatgtaagagctcagagacagca 323
Query: 124 tagaaacaaaaatctcctgagaccaggcaaagcagctaagaggtgagaagatat---gct 180
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 324 tagaaacaaaaagctcctgagaccaggcaaagcagctaagaggtgagaagatattatgct 383
Query: 181 ctatttctctatgagctagaaggcacacagttcatggattagagacacaacacaaagact 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctatttctctatgagctagaagacacacagttcatggattagagacacaacacaaagact 443
Query: 241 tgtaacatcttaaagctaaaaaaacgaatgtttgataatccaggacttcgaa 292
||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 tgtaacatcttaaagctaaaaaa-cgaatgtttgataatccaggacttcgaa 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 694
Length adjustment: 9
Effective length of query: 283
Effective length of database: 685
Effective search space: 193855
Effective search space used: 193855
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
