BAC Information

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BAC

Clone NameMSMg01-169K16
Chromosome18 (Build37)
Map Location 15,702,287 - 15,702,467
singlet/doubletsinglet
Overlap geneChst9
Upstream geneEG623867, Ss18, LOC100040446, Psma8, Taf4b, LOC669965, Kctd1, EG622268, LOC100040151, Aqp4, LOC665473
Downstream geneLOC670012, LOC100040551, EG225228, LOC100040202, Ppia-ps18_172.1, EG665509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169K16.T7 (MSMg01no169_k16.b1)MSMg01-169K16.TJ (MSMg01no169_k16.g1)
ACCAG366471AG366472
length786709
length of high quality
(start - end)
187 (174 - 360)327 (383 - 709)
definitionCHROMAT_FILE: MSMg01no169_k16.b1 PHD_FILE: MSMg01no169_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:25 2005CHROMAT_FILE: MSMg01no169_k16.g1 PHD_FILE: MSMg01no169_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAAAATACTTTCAACCCATCATCAAACGCTTCCTTTCCTTANNTTGATCT
ATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAAGCCGCNGGAATC
AACATTGTTTCCCGAAAGAGAGGACTGGNGACTGGTTGTGAATGGNATGA
GGATGGATATATTACCCCCCAGAGTAAACACCATGTCTGTGTAGGTCATG
AGTAAGATATTTTTGTAACTTAGTCTTTCCATGTGAAAAATATTACCTGC
TATGTGTATTTATGTTTTCAACTCTATTTAAAAAAAAAACTGCATATTTG
CTTACTAGCATTTTATGGAGTCTTTTAGACAAAGGCATATCTAATTCAAT
CTGTAAACACTTCTATTTTTTTTGTCCATGCCTCAAATTGGGAAACCAGA
AGAAATGTTTTTTTTAACCCCCCCCCCCCCCCAAAAATGAGAAGTCAGAG
GCTTTCTGTGGTCTCGTTGCTTAAAAAACAAAATCGGAGACTCTTCTCAG
ACAGTTTGAAGATCGTTCTTTACAGACGACTATTGATCGAAATCGTCAGC
CAAGAGCACACCTCCGTTCTAAAACACCCCTCATTTTCATGCACCCCTCC
CCGCACTGGTAACCTGACCCACACTAAACTGACCCTGCCGCAACGTCAAT
GAGTTTGTTGTGCACCAATCCCCATACGCCCGCAACATCCAACACTGGCC
CCATCTATCAGACCTTTGCCAAATATCCGTCATTTACGCCTATAGCCCCC
CCTTTATGCACCCCCCTTTTTAACCCACAAACAAAG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCCCCATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCTTGAGATTTCACCTCACACCAGTCAGAATGGCTAAGATAA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCATAATATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTTTCTTGTTCATACCCCCCCCACCATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATTGCAAACTTATTTATAATAGCCAGAA
GCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGACCTGACACAATATGTACTCACTGATAAGT
GGATATTAGCCCAAAACCTAGGATACCCAATATATAAGATACAATTTGCT
AAACACATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_k16.b1 MSMg01no169_k16.b1 CHROMAT_FILE:
MSMg01no169_k16.b1 PHD_FILE: MSMg01no169_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:25 2005
         (187 letters)



>mm_chr18_15702079_15702667
          Length = 589

 Score =  323 bits (167), Expect = 4e-93
 Identities = 177/181 (97%), Gaps = 2/181 (1%)
 Strand = Plus / Minus

                                                                       
Query: 9   catgtctgtgtaggtcatgagtaagatatttttgtaacttagtctttccatgtgaaaaat 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 catgtctgtgtaggtcatgagtaagatatttttgtaacttagtctttccatgtgaaaaat 330

                                                                       
Query: 69  attacctgctatgtgtatttatgttttcaactctattt--aaaaaaaaaactgcatattt 126
           ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||  |
Sbjct: 329 attacctgctatgtgtatttatgttttcaactctatttaaaaaaaaaaaactgcatagct 270

                                                                       
Query: 127 gcttactagcattttatggagtcttttagacaaaggcatatctaattcaatctgtaaaca 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gcttactagcattttatggagtcttttagacaaaggcatatctaattcaatctgtaaaca 210

            
Query: 187 c 187
           |
Sbjct: 209 c 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 589
Length adjustment: 8
Effective length of query: 179
Effective length of database: 581
Effective search space:   103999
Effective search space used:   103999
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)