BAC Information

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BAC

Clone NameMSMg01-169P15
Chromosome18 (Build37)
Map Location 60,133,546 - 60,133,898
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamts19, A730017C20Rik, 4833446K15Rik, LOC667549
Downstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169P15.T7 (MSMg01no169_p15.b1)MSMg01-169P15.TJ (MSMg01no169_p15.g1)
ACCAG366687AG366688
length723732
length of high quality
(start - end)
324 (385 - 708)354 (377 - 730)
definitionCHROMAT_FILE: MSMg01no169_p15.b1 PHD_FILE: MSMg01no169_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:48 2005CHROMAT_FILE: MSMg01no169_p15.g1 PHD_FILE: MSMg01no169_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATTTAACACATTAGTATTATAANTCGGAAAGTAAACACCAAATA
TAACAAGAAAAAAATTAAAAAGATCAATTGTTCCCTAAAGAAGATGTGAA
ATTGGGAAGAAAGCACATACAGAGTGTTTAAAATCATTAGACATTAGGGA
AATGCAAATAAGAAAAGATGAAATTACATTGCTATACAACTGTCAAAATG
TATAAAGTAAAAGATTGACAATATCCAGTATTTCCTTTGCAGAAGAAATG
GAGTTCCCACGCATTGTTGTTTGGAATCTAAAATCGAGTAGTTCTGTCAG
TTTTTAAAAATATTTTTTCTCACCACCCCCCCCATGCCATGACTTAATAT
TCCCACTTCTGGATATTTACTCTAGACCTGGACCCAAATATTTCTAGTGA
CTCTATTCAAAATGTCCACACCTGAGCATTACTTTCATGGATGTCCATGG
GTGAACAGATAAGTCGTGGTATATTCACTGTGAGGTTCTTCTCAGCAGCA
TGAAGAAATGATATCGCGGTTGCGGCAGTAACCAGAGCAATCAAGGGGAA
AGAGCAAGTGAAAGAGACCCGTTCTCAGGAACTGACCACGCTGTGTGATT
CCATTTATATGCTAGTCTTGGAAAGCTAGTCAATAGTGATAAGAGAGTGA
GAGGTTAGGGACTGGGAAGGAGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGAAAAAAGAATGAGAATGGATC
TCTACACTGACTGAAGTAGGGTTTGTTAGTCAGTGGACTTGAGGTTTATA
TCAGAAGATTGTTGGTCAGAATGAAGAGTCACTTTGATTGTATACTAAGG
TAGGGGAGCAAAATTTGCCTTATGTACAGTTTGGTGTTTTTTCTACAAGA
TGTTCAGCAACCTATATTATAGAGTGGTTAGAGACTCTCAGGGCTGGTTT
AGGAAAAGGACAACAGACAAGAGGAAAAATGAAAATGGAGATAAGCCACT
TGTGTGTTTTAAAAGCACCCCCACCTGGAAAAGTTCACCTGAGCCTGAGG
GAGGTGGAAGGAAAGAGCATGAAAGGGAGGAAAGCAGGGCCAGAGGGGAG
ACTGTGGATACTATGATGGCTGCAACTTTGATCTTGGAGCAGATTTTATT
ATATTTTAATAAGCTATATTATTTTCTTCTTCTAAGCTTAAGCAATTTAC
TCAACCCTTCAAGCCTGAGTTCCCTTCTCATTAAAATGGAGACTATAGTA
GCATCTACTTCATAGAGTTGATTCCAGAATTAAATGAAACAATAAATCTA
ATGTTATAGCTTGGTGTCTTGGCACATAGTGAGTACTTAACCAATAGTAA
AGCAATCGCTGCAGAGAATTCAGTGCCTATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_p15.g1 MSMg01no169_p15.g1 CHROMAT_FILE:
MSMg01no169_p15.g1 PHD_FILE: MSMg01no169_p15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:48 2005
         (354 letters)



>mm_chr18_60133346_60134098
          Length = 753

 Score =  646 bits (334), Expect = 0.0
 Identities = 349/354 (98%), Gaps = 1/354 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaaaagttcacctgagcctgagggaggtggaaggaaagagcatgaaagggaggaaagca 60
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 ggaaaagttcacccgagcctgagggaggtggaaggaaagagcatgaaagggaggaa-gca 259

                                                                       
Query: 61  gggccagaggggagactgtggatactatgatggctgcaactttgatcttggagcagattt 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 260 gggccagaggggagactgtggatactacgatggctgcaactttgatcttggagcagattt 319

                                                                       
Query: 121 tattatattttaataagctatattattttcttcttctaagcttaagcaatttactcaacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tattatattttaataagctatattattttcttcttctaagcttaagcaatttactcaacc 379

                                                                       
Query: 181 cttcaagcctgagttcccttctcattaaaatggagactatagtagcatctacttcataga 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 380 cttcaagcctgagttcccttctcattaaaatggagactatagtaacatctacttcataga 439

                                                                       
Query: 241 gttgattccagaattaaatgaaacaataaatctaatgttatagcttggtgtcttggcaca 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttgattccagagttaaatgaaacaataaatctaatgttatagcttggtgtcttggcaca 499

                                                                 
Query: 301 tagtgagtacttaaccaatagtaaagcaatcgctgcagagaattcagtgcctat 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tagtgagtacttaaccaatagtaaagcaatcgctgcagagaattcagtgcctat 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 753
Length adjustment: 9
Effective length of query: 345
Effective length of database: 744
Effective search space:   256680
Effective search space used:   256680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)