BAC Information

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BAC

Clone NameMSMg01-170F23
Chromosome18 (Build37)
Map Location 87,190,075 - 87,190,362
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545270, LOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719
Downstream geneLOC383318, Ppia-ps18_1039.1, LOC329008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170F23.T7 (MSMg01no170_f23.b1)MSMg01-170F23.TJ (MSMg01no170_f23.g1)
ACCAG366961AG366962
length753739
length of high quality
(start - end)
320 (43 - 362)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no170_f23.b1 PHD_FILE: MSMg01no170_f23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:18 2005CHROMAT_FILE: MSMg01no170_f23.g1 PHD_FILE: MSMg01no170_f23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGTTTAGCTCTGTACCCAATTTTTAATAAGATTATGTGATTCTCTG
GAGTCTAACTTCTTGAGTCCTTTGTATATATTGGATATTAGCTCTCTATC
AGATGTAGAATTAATAAAGATCTTTCCCCAATTGTTTGGTTGCCATTTTG
TCCTATAGAAAGTGCTCTTTTGTGAGACATATTGTGTGTGTGTGTGTGTG
TGTGTGTGTGCGTGTGTGTGTATAAAAGAAATAGTATCTTAACATTAATT
TGAATTCAATGCTTCTCTTTGAAGTACAATAACTTCAAACTTAAAATGAG
CTCTACTTATTANTTGNCATTCCGNGCAACCCCCACTCTGTATGTTGCAA
TTTAGAGTTGAGTTTCAATTCAAAGGTAAAACCAGACTTAATAACTATGG
CAATGAAGTCATTATATTTGTATCTACAATGTCCATCTGTGTTGCATTTC
CAAACATTGCTTCTTGATTTGGTCCTATTGGGAATTTTAAGAGTATGGCC
ACTGTAGAAAAATTAAATCACAGAGAACATTCGACAAAAGTGGATTAGCA
AACCTGTATTTTATGATCTTTCTCTCCTTCCTTCTTCTCTCCTGCTTTCC
TTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCC
TTTCCTTTCCTTTCCTCTCCTTTCTCCTCTTCTTTCCTTTCCTTTCCTTT
CCN
ACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGGATTTGTGTAAAAATGAGTT
TCCTTATGAAAATCAGTTACTAAGCCACATAAGTAACTGAGTTTGGCCTA
GTACATTTTATATGTACCTGGATGCTGTCCACTGGATGTTGACATCTGGA
TTCCACAATTACACAGAGAGGCAAGTGTATCTACACTTATACACATGCAT
AACACTTACCCCCCAACACACACATCAGATCCATTATTTTTTTTAAATCC
CTATGAATTTAAGAAAATGAATGTAATTTCGTTAGAGCCTACTGCCTCAG
TTTAGAAATTATAATTTTTTTTCTTCCCANGCAATCACCAGATGAATTCT
TCAAAAGAAAAAGATAACATCTTGAAGACATATAAAACAAAGTACCTAAC
AATAACTTTACTCATAAGCCCAACATATTAAGTTCAAATAATAATTTATT
ATAAATATTTAATCAGAGAAGTTAGGCCATCCTCAGATATGTAGCCAATT
TTAAGACAGGATAGGCTACAAGAGACACATTCTGGAGAGATCAAAATAAA
ACAAAATTTAAAAATAAAAACTTAATAGCTTCCAATAAATACAGAAACGG
ACCTAAAAATAGTAAGTAAATAATGCTTTATCTGAGATGATGTTCATCAT
TTCCTACATGAAATATCAAGAAGTCCCAAATTTATGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_f23.g1 MSMg01no170_f23.g1 CHROMAT_FILE:
MSMg01no170_f23.g1 PHD_FILE: MSMg01no170_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:18 2005
         (288 letters)



>mm_chr18_87189875_87190562
          Length = 688

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actggatttgtgtaaaaatgagtttccttatgaaaatcagttactaagccacataagtaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 actggatttgtgtaaaaatgagtttccttatgaaaatcagttactaagccacataaataa 260

                                                                       
Query: 61  ctgagtttggcctagtacattttatatgtacctggatgctgtccactggatgttgacatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgagtttggcctagtacattttatatgtacctggatgctgtccactggatgttgacatc 320

                                                                       
Query: 121 tggattccacaattacacagagaggcaagtgtatctacacttatacacatgcataacact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggattccacaattacacagagaggcaagtgtatctacacttatacacatgcataacact 380

                                                                       
Query: 181 taccccccaacacacacatcagatccattattttttttaaatccctatgaatttaagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taccccccaacacacacatcagatccattattttttttaaatccctatgaatttaagaaa 440

                                                           
Query: 241 atgaatgtaatttcgttagagcctactgcctcagtttagaaattataa 288
           ||||||||||   |||||||||||||||||||||||||||||||||||
Sbjct: 441 atgaatgtaaaaccgttagagcctactgcctcagtttagaaattataa 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)