BAC Information

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BAC

Clone NameMSMg01-172A21
Chromosome18 (Build37)
Map Location 85,063,888 - 85,064,182
singlet/doubletsinglet
Overlap genenone
Upstream geneTshz1, Zadh2, LOC669856, Zfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5
Downstream geneFbxo15, 1700034H14Rik, LOC100039765, LOC665382, LOC545269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172A21.T7 (MSMg01no172_a21.b1)MSMg01-172A21.TJ (MSMg01no172_a21.g1)
ACCAG368090AG368091
length873737
length of high quality
(start - end)
101 (47 - 147)295 (68 - 362)
definitionCHROMAT_FILE: MSMg01no172_a21.b1 PHD_FILE: MSMg01no172_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:25 2005CHROMAT_FILE: MSMg01no172_a21.g1 PHD_FILE: MSMg01no172_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGATCTTTCCACGACTTTTATCATGAATGGGTGTTGGATTTTG
TCAAATGCTTTTTCCGAGTATAAGGAGATGATCATGTGGTTTTTGCCTTT
GAGTTTGTCCATATAACGCATTACGTTGACGAATTTACATATATTATAAC
CTCCCCGTATCTCTGTACTGAAACTTATTTGTTCACCTTTGCACAGTCGC
CATCATTCTACCTTTATACCACCGCGCTGTTCTCATTTACCTCTCCCCGC
TCTATTTCCCCAGAGATTTTTTTTTTTATTTACTCCCCCAACACACACAA
GAAAAAAAATTTTAGATANATTCCCCAAGACAAGCCCCCAATTTATATTT
TTATAAAGATAAAAAGGGAAGTTTTTGTCCCCCTAAAAAAAAAAAAAAAA
AAAACCTCTCGGGCGGGGCGGGCCGCCTAAACAATCTACACTAATCCACT
ACCTTATTTATCTCTCCTCTATAACCTTTCTCTCTTCCTCTCTCCATTCA
TATTACCCCCCATTCACCCTACGTCTCTATCTCCCACCATCTTTCACACA
CTCTTCTATAAATTCTACTTTCATCCTCTATAAATAAATTCTCTCCCATC
ACTCTCTCCCCACCCTTCTCNCCCCTCATTACCTTAACATGCCTACCTCT
CCTTCTCTATTCTTTATCATCCCCCCATCACTCTTCTATAAACAAAATAT
ACACTTTACCCCTTCACCTATATTCTCTTAACCTCATCATATAATCACAC
CCCCACCCTAATTCTCCTCCTAATACTCTTCGGACACCCCCCTCGCCTCC
CCTCCTTTATATACCACCTACTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXGTATTTACAGGAAGAGGTTGTTCTCATGGTAGC
TCTCTACTCCCCTTGCACTAACCAGCACTGCCTAACCAGCTCGTGATTCT
TGTGTGGGCATGAAAAATGTTTTGTGACACACCATGTGAATCAGAGCCAA
ACCAAAGGATGTCATCATTCGAAAGATTTATAACATGATTTTGCCACTGA
AATATGACTTCCATGATATAAACCTTTCACTTGGTATGAGCAAAAAAGAG
AAAAGAAAAAAGAAAAAGAACATCAACAGTGGACTCAGCTCTTATTTATT
TGTGTGTTTATTTACACCACCCGCCCCCCAACCTGTGGGTCAAGACCCCT
CTGAAGTCCAAAGGCTTTTTCACAGAAGATACATATCAGATATTATGCAT
GTCAAATGTTTACAGCAGTTAAAATTATGCTATAAAGTAGCATCAGAAAT
AATTTTACAGTTGGGAGTCACCACAACATGAGTATCTATATTTAAGGCCC
TTCAGCGTTAGGAACGTTGAGTATCCCTTATTACCCCCTACTGCCCGATA
TCCTATTGCAAATTCCCTCTTAAATCCCGTCCCTTATAACATCACCTGCA
TTTACCTTTCTCTTATCTTTCCCTCTCACCGTTATATTCTCCTGCTCACC
TAATACCCGATTATTTCTCTACCCGCTCCTCCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_a21.g1 MSMg01no172_a21.g1 CHROMAT_FILE:
MSMg01no172_a21.g1 PHD_FILE: MSMg01no172_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:26 2005
         (295 letters)



>mm_chr18_85063688_85064382
          Length = 695

 Score =  547 bits (283), Expect = e-160
 Identities = 292/295 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtatttacaggaagaggttgttctcatggtagctctctactccccttgcactaaccagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtatttacaggaagaggttgttctcatggtagctctctactccccttgcactaaccagca 260

                                                                       
Query: 61  ctgcctaaccagctcgtgattcttgtgtgggcatgaaaaatgttttgtgacacaccatgt 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcctaaccagcttgtgattcttgtgtgggcatgaaaaatgttttgtgacacaccatgt 320

                                                                       
Query: 121 gaatcagagccaaaccaaaggatgtcatcattcgaaagatttataacatgattttgccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatcagagccaaaccaaaggatgtcatcattcgaaagatttataacatgattttgccac 380

                                                                       
Query: 181 tgaaatatgacttccatgatataaacctttcacttggtatgagcaaaaaagagaaaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaatatgacttccatgatataaacctttcacttggtatgagcaaaaaagagaaaagaa 440

                                                                  
Query: 241 aaaagaaaaagaacatcaacagtggactcagctcttatttatttgtgtgtttatt 295
           |||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaagaaaaaaaacaacaacagtggactcagctcttatttatttgtgtgtttatt 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)