BAC Information

Click to search

BAC

Clone NameMSMg01-172O16
Chromosome18 (Build37)
Map Location 86,334,176 - 86,334,478
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665382, LOC545269, LOC545270
Downstream geneLOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172O16.T7 (MSMg01no172_o16.b1)MSMg01-172O16.TJ (MSMg01no172_o16.g1)
ACCAG368682AG368683
length709710
length of high quality
(start - end)
194 (124 - 317)285 (74 - 358)
definitionCHROMAT_FILE: MSMg01no172_o16.b1 PHD_FILE: MSMg01no172_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:29 2005CHROMAT_FILE: MSMg01no172_o16.g1 PHD_FILE: MSMg01no172_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAACGGATCCGCGGAA
TTCTCAACTTTACCAAAAAGAATGGCTGAGAAACTTCTAAAGAAATGTCG
TTAATCACCAGGGATTTGAACCTCAAAACAACCCTGAGATTCTACCTCAC
ACAAGTCAGAATGGCTAAGGTCAAAACCTCTGGTGACAGCAGATTCTGTC
AAGGATGTGGAGAAAGAGGAACACCCTTCCATTGCTGGTGGGATTGCAAG
CTGTTACAACCACTCTGAAAATCAGTCTGGCAGTTCCTCAGAAAATTGGA
CATAGTGCTACCTGAATTTTTTTATACCACTCCGGGACAAATACCCAAAA
ATTCTCCATANATCTCCAGCANACCCGCTCCACTATGTTCATAGCAGCCT
TATAATAGCCAGAAGCTAAAAAAAAAACAGATGCCCTTCAACAGAGAAAT
GGATACAGAAAATGTGGTGCATTTACAAAATGGAGTATTACATTGTTAAG
AACAATGAATTTATGAAATTCTTAGGCAAATGGATGGAACTAGAAAATAT
CATCCTGATTGAGATAACCAAATCACAAAAGAACACTCATGGTACACTCT
CTCTGATAAGTGGATATTAGCCCAAAACTCAGAATACCCAAGATACAATT
CACTGATCTCTAGAAGCTCCAGAAGAAGGAAAATCAAAGCGTGGGTGCTC
AGCTGTTCC
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGGAAAAATTTTAAACTGGCTATCATG
ACAATATTCATCATCAGGCTATATAGAATTGGGAAAATAAATGCAAAATA
AGAAAAAGTGGGCTGAGGAGACTGGACATATATATATATATTCCAGGTAA
CAGAACATCAGTAAGAGAAGTCAGGGTAGGAACTAAAGCTAAGAAGGAAC
TACACACACACACACACACACACACACACACACACACGCAATCTGTAGTT
CATGCTCTGAAATTAGTGTATATGTATGTCACTGAAGTTTTAACTTCTGA
ATAAGTGTTCATTCTCCTGNTACCAATCCAATCAGAGATCCTAGCCAGGT
AGAGGAGGTGCATGCTTTAAATATAAAAACTCATGGCAATCTGGTCTACA
GAGCAAGTTTCACGATAGCCACAGCTGCATAGAGAAACCCTGTCACAAAA
ACCAACTAAATAAAATATAAGCAATCGTTTTTGCACATGATGCAATCTGT
CTGAATTTAAAAGTTCAAAACCTGCACATTTGCTGGACTGGAATCTGCTA
ATAGAAAACCATGGTATCTGCATATTCTTTCCTAACTTTTCTCAGTTCCT
TTACTTTCTTCTTTTGCCTCATTTTGGTCCCCCGAATCCTTCTCTTCTTT
AATAAAGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_o16.g1 MSMg01no172_o16.g1 CHROMAT_FILE:
MSMg01no172_o16.g1 PHD_FILE: MSMg01no172_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:29 2005
         (285 letters)



>mm_chr18_86334174_86334858
          Length = 685

 Score =  335 bits (173), Expect = 2e-96
 Identities = 248/313 (79%), Gaps = 62/313 (19%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggaaaaattttaaactggctatcatgacaatattcatcatcaggctatatagaattggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tggaaaaattttaaactggctatcatgacaatattcatcatcaggctatatagaattggg 246

                                                                       
Query: 61  aaaataaatgcaaaataagaaaaagtgggctgaggagactggaca--------------- 105
           ||||||||||||||||||||||||||||||||||||||| |||||               
Sbjct: 245 aaaataaatgcaaaataagaaaaagtgggctgaggagaccggacagaaaaaaaaaaaaaa 186

                                                                       
Query: 106 -------------------------------------tatatatatatattccaggtaac 128
                                                |||||||||||||||||||||||
Sbjct: 185 aaaaatatatatatatatatatatatatatatatatatatatatatatattccaggtaac 126

                                                                       
Query: 129 agaacatcagtaagagaagtcagggtaggaactaaagctaagaaggaactacacacacac 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 agaacatcagtaagagaagtcagggtaggaactaaagctaagaaggaactacacacacac 66

                                                                       
Query: 189 acacacacacacacacacacacacacgcaatctgtagttcatgctctgaaattagtgtat 248
           |||||||||||||||           ||||||||||||||||||||||||||||||||| 
Sbjct: 65  acacacacacacacat----------gcaatctgtagttcatgctctgaaattagtgtaa 16

                        
Query: 249 atgtatgtcactg 261
           |||||||||||||
Sbjct: 15  atgtatgtcactg 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)