Query= MSMg01no173_l16.b1 MSMg01no173_l16.b1 CHROMAT_FILE:
MSMg01no173_l16.b1 PHD_FILE: MSMg01no173_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:27 2005
(311 letters)
>mm_chr18_63261125_63261835
Length = 711
Score = 441 bits (228), Expect = e-128
Identities = 277/308 (89%), Gaps = 23/308 (7%)
Strand = Plus / Plus
Query: 4 ggaattccttcagttctaacaaccacttatttttgagcactgaaaggaagtagaggaagc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttcagttctaacaaccacttatttttgagcactgaaaggaagtagaggaagc 263
Query: 64 aggagttatctaggagagtttggcttgcctgccctatctacaccagggcaagtttccatg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aggagttatctaggagagtttggcttgcctgccctatctacaccagggcaagtttccatg 323
Query: 124 gcaaccagcaagcatgctggggagtctcatggctctgctgcgtgggacacacaccacaca 183
|||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct: 324 gcaaccagcaagcatgctggggagtctcatggctctgctgcgtgggacacaccccccccc 383
Query: 184 cacacacacacacacacacacacacacacacacacacacacacacacacacacacacaaa 243
| | | | ||||||||||||||||||||||||||||||
Sbjct: 384 ccccccc-----------------------cacacacacacacacacacacacacacaaa 420
Query: 244 ccatcagtgagaagttcaaggtcaaggttaatagtccaagttagcgtgctgagttggctt 303
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 421 ccatcagtgagaagttcaaggtcaaggttaaaagtccaagttagcgtgctgagttggctt 480
Query: 304 ctaactga 311
||||||||
Sbjct: 481 ctaactga 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space: 212004
Effective search space used: 212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no173_l16.g1 MSMg01no173_l16.g1 CHROMAT_FILE:
MSMg01no173_l16.g1 PHD_FILE: MSMg01no173_l16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:27 2005
(241 letters)
>mm_chr18_63394987_63395628
Length = 642
Score = 404 bits (209), Expect = e-117
Identities = 234/243 (96%), Gaps = 3/243 (1%)
Strand = Plus / Minus
Query: 1 taattcaggtctctggactccagagtacatattctaatattcatgggaaag--tttttag 58
|||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||
Sbjct: 442 taattcaggtctctggactccagagtacatattctaatattcctggg-aagtttttttag 384
Query: 59 ggagaagttgggttttggttacttatattttggagaataagattagagtggaaaatatgg 118
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 383 ggagaagttgggttttggttacttatattttggagaataagattagaatggaaaatatgg 324
Query: 119 cggttacgctaggtcaataggcaggtaaacttatataacatgcttataagctagggcctt 178
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 323 tggttatgctaggtcaataggcaggtaaacttgtataacatgcttataagctagggtctt 264
Query: 179 gccgtctgtacttgatttggggttgaatctgggaaaataattgaaaaaagactatgcttg 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gccgtctgtacttgatttggggttgaatctgggaaaataattgaaaaaagactatgcttg 204
Query: 239 aat 241
|||
Sbjct: 203 aat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 642
Length adjustment: 9
Effective length of query: 232
Effective length of database: 633
Effective search space: 146856
Effective search space used: 146856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
