BAC Information

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BAC

Clone NameMSMg01-175F04
Chromosome18 (Build37)
Map Location 82,530,698 - 82,530,942
singlet/doubletsinglet
Overlap geneB020010K11Rik
Upstream geneLOC100039458, LOC100040871
Downstream geneGalr1, Mbp, EG637748, Zfp236, LOC100039563, Zfp516, LOC100041001, 4921531P14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175F04.T7 (MSMg01no175_f04.b1)MSMg01-175F04.TJ (MSMg01no175_f04.g1)
ACCAG370348AG370349
length812716
length of high quality
(start - end)
249 (47 - 295)290 (92 - 381)
definitionCHROMAT_FILE: MSMg01no175_f04.b1 PHD_FILE: MSMg01no175_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:23 2005CHROMAT_FILE: MSMg01no175_f04.g1 PHD_FILE: MSMg01no175_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTCTCAGGACAGACTTCAGAAATGTGAGAATGGGATCCTAGAAT
CCAGCTTGCTCAGCCCTTCCCCTCTCACAGATCCCAACCGCTGCCCTACT
GAGAGCACTGTCTGTGATTCTCTAACAAACAGACCTCCAGATGCCAAGGT
TTCTCACCAGGGAAGTGGGTACTGGTCTCTCCCTGTCTGGGGCATGTGAT
ACAGTGACGGGAAGCCAGCTAACACACTTACCTGCCACTAAAGAGCCTCC
TCTCCAAATGCTAGGGGTTTTTATACTTGAACCTAACAGGCCAAAGGCAA
AAACGCGGTTTGAGTGGATTCCCCGGCTAGCCCCCCGGANAANNANNNNA
GGGATTTGGGGGGTGACCCNCCNNGNTCAAAAAAAAAAAAAAAAATTCTT
TTGTCCCCTCGGCCCCCCTTCCTCCCTCTTCTTTTCAACAAAAAAACCAC
CGCCTTCCTCCCTTCCCGGCGACGTGGGGGGCACTTGTGGNTTTTTTTTC
CCCTCCAAAAAGCCCCCCGCCCCCATCAGCCATACCCTCTTCATTTAAAA
AAACACCTCTCTCTTCCCTCCCTTTCCTATCATATCATAAACACATCCCG
TTTTCCACCGGGTTTTCCTGCGGCAGCTTCTTTAAAGGGATGAAAAGTGG
TGGTTTGGGCTTTTGTACCACACATTATTTCTTTTCTTGATAGGCTTCCC
CCCCGAACTCCTCGCTTCTCCACTTATATAATCCCCCCCTCTTCCTACAC
TTCATCACCTTN
NNCCCCCCCCCNCCTAGGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGAAGG
AAAGGATAATATAGACTGCATGAGTCAGAAGGCTTCTTAAAGAAAACCTG
GCTGGGCAGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAG
GCAGGCAGATTTCTGAGTTCAAAGTCAGCCTGGTCTACAGAGGGAGTTCC
AGGACAGCCAGGACTACACAGAAAAACCCTGTCTCAAAAACAAACAAACA
AACAAACAAACAAACAAACCAAACCCCAATCAAACAAAAACAAAACAAAA
ACAACAACAACAAAACAACCCCAAAAAACCATATTTAACCACCCCCCACC
CTGGGTAGAGTTTACTTGAAAATGAAGACTGAAGTCCCAGGAATGACTAA
GGGAATGTGAGCTGAAGAGGGAACATTTCACAAGTCTAGCATCTTCCCTT
TGCAGGACAGGAGGTTTCCTGCTAGACTCTGCAGCAGGAACTCTTCCTGT
GTATCAGGTTCAGCAGGCCCACAGCCTCTTACAGAGACTCCTATTCATGC
CCCCAAGAGCCCCCAGGACCACAGACTGACATTATGACCTGGACTAAGTG
GGGTAGTTTCTCAGGTGCCGCATTTAACATGCTGGGTTCTCCTGCAGATG
AAATAAACCCCACTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_f04.b1 MSMg01no175_f04.b1 CHROMAT_FILE:
MSMg01no175_f04.b1 PHD_FILE: MSMg01no175_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:23 2005
         (249 letters)



>mm_chr18_82530494_82531142
          Length = 649

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttctcaggacagacttcagaaatgtgagaatgggatcctagaatccagcttgct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttctcaggacagacttcagaaatgtgagaatgggatcctagaatccagcttgct 264

                                                                       
Query: 65  cagcccttcccctctcacagatcccaaccgctgccctactgagagcactgtctgtgattc 124
           ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 265 cagcccttcccctctcacagatcccaaccgctgccctgctgagagcactgcctgtgattc 324

                                                                       
Query: 125 tctaacaaacagacctccagatgccaaggtttctcaccagggaagtgggtactggtctct 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 tctaacaaacagacctccagatgccaaggtttctcaccagggaagtgggtactggtatct 384

                                                                       
Query: 185 ccctgtctggggcatgtgatacagtgacgggaagccagctaacacacttacctgccacta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccctgtctggggcatgtgatacagtgacgggaagccagctaacacacttacctgccacta 444

                
Query: 245 aagag 249
           |||||
Sbjct: 445 aagag 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)