BAC Information

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BAC

Clone NameMSMg01-175N10
Chromosome18 (Build37)
Map Location 75,293,313 - 75,436,187
singlet/doubletdoublet
Overlap geneDym, LOC628356, EG667777
Upstream gene2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b, Acaa2, LOC672799, Lipg, Rpl17, BC031181
Downstream geneSmad7, Gm672, Zbtb7c, 4833419G08Rik, LOC668184, Smad2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175N10.T7 (MSMg01no175_n10.b1)MSMg01-175N10.TJ (MSMg01no175_n10.g1)
ACCAG370711AG370712
length709719
length of high quality
(start - end)
313 (46 - 358)280 (91 - 370)
definitionCHROMAT_FILE: MSMg01no175_n10.b1 PHD_FILE: MSMg01no175_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:00 2005CHROMAT_FILE: MSMg01no175_n10.g1 PHD_FILE: MSMg01no175_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,293,313 - 75,293,618)(75,435,909 - 75,436,187)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTTGTTCTTCCCCAATGCCTGGGCACAGACAGGCTCCAGATTCT
GCCTTGCTGTGGTCTCCGATGATCCTCGTTTGATCTTGGCAGAGCACTAG
CCAAGGAAGGAAGGAGAAATGTTTGTCTTAGAAACCTGGCTTCCTGTACT
TCCTGTGGCAGTGGTACTTTGAAGGCAGAGAAGTTTTTCAGGGAAATTTG
GCACGGCTTGCCTTTCAGTTTAGTCTTCTTAAGAAGTTACATTAGGAGCA
TTTACAGTTCCCAGTTGGAAATTTCTAAGCTTTCGATTGAACTTTGTGAC
TGTGTTTATAGTTGCTGCACCATACAGCAGTGTCCTGGCAGGCTTGGTGG
GACATGCGAACACTTCATAATTGATTTAAATTCCAGTTTAGACGGCTGGC
ACAAGCAGAATGTTTGCTTTCAAAGCAGGACAGTGCCCACTTACCCGAAT
CTGCTTTCTTGTAAGTAGAGACCTCTGTGGACAGCCTTGCCCCGTGGGAA
ATGAACCATTAAACTAGCATGCTTAGAGCTCTGTAGATTGTAACATTGCA
TGGTAGAGGTGCATGGTCTGCGACCCTTAGTTGTGTATTATCAAGCACCC
AGTCCTGTCTCATAAGGACCAGGGATTTTATTTTTACCCTACTTTTAAAC
CAAAAGGAA
CTTTATTCCNNCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTCTGGA
GCCTGCAGGGAGAACACTTTAGAGGAGGGACGCACCCCCAGAATTTTCTG
CAACACGTGTGCTCCAAGCTGGCCCAGAGGCAGCCCAGGAACAACCATGG
TGTACCTTGCCTTCTGAGGGGTGCTTATCACAGGAAGGAACCAGACGCTT
GGATGGAAGGGATGGGAGACGTGCAGGAAGTGAGCGTGGTCTGACTAGAA
AGAACGCCAGGCGTCCACACACCCAACAGATGTTAGTACCTAAGAGCACG
GCCAGAGGCTTAGTGAGCAAATGTATTTTTTTACTACCCCCCCCCCAGAG
AGTCACACAGAAAGGCTGGAGATGGCTCGGCGCCCCAAAAACAAAGAATG
CTCTTGCAGAGGACCCAGGTTCGGTTCCACCATCCCTGTGGCTGCTCACA
ATCATCTGTAACTGCAGTTCCAAGGGATCTGATATCTTCTTCCAGCCTCC
ATGGGCACAAGCAGCGCTCAGACACACACGTGGGCAAAATACTCAGACCC
ACAAAATACAGTAACTTACTAAGATTAACGAAGAAAGTTTGGAAAGGCTC
CTGAATACTGGGTGAATTGTGGGGCAGTGGCCCATAGTCATCTGGCACCA
ATGAGCCTTATGAAGGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_n10.b1 MSMg01no175_n10.b1 CHROMAT_FILE:
MSMg01no175_n10.b1 PHD_FILE: MSMg01no175_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:00 2005
         (313 letters)



>mm_chr18_75293109_75293821
          Length = 713

 Score =  576 bits (298), Expect = e-169
 Identities = 304/306 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacttgttcttccccaatgcctgggcacagacaggctccagattctgccttgctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacttgttcttccccaatgcctgggcacagacaggctccagattctgccttgctg 264

                                                                       
Query: 65  tggtctccgatgatcctcgtttgatcttggcagagcactagccaaggaaggaaggagaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggtctccgatgatcctcgtttgatcttggcagagcactagccaaggaaggaaggagaaa 324

                                                                       
Query: 125 tgtttgtcttagaaacctggcttcctgtacttcctgtggcagtggtactttgaaggcaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtttgtcttagaaacctggcttcctgtacttcctgtggcagtggtactttgaaggcaga 384

                                                                       
Query: 185 gaagtttttcagggaaatttggcacggcttgcctttcagtttagtcttcttaagaagtta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaagtttttcagggaaatttggcacggcttgcctttcagtttagtcttcttaagaagtta 444

                                                                       
Query: 245 cattaggagcatttacagttcccagttggaaatttctaagctttcgattgaactttgtga 304
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 445 cattaggagcatttacagttcccagttggaaatttctaagcttttaattgaactttgtga 504

                 
Query: 305 ctgtgt 310
           ||||||
Sbjct: 505 ctgtgt 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no175_n10.g1 MSMg01no175_n10.g1 CHROMAT_FILE:
MSMg01no175_n10.g1 PHD_FILE: MSMg01no175_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:00 2005
         (280 letters)



>mm_chr18_75435709_75436387
          Length = 679

 Score =  474 bits (245), Expect = e-138
 Identities = 271/283 (95%), Gaps = 7/283 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagttctggagcctgcagggagaacactttagaggagggac---gcacccccagaatttt 57
           |||||| ||||||||||||||||||||||||||||||||||   |||    |||||||||
Sbjct: 479 cagttccggagcctgcagggagaacactttagaggagggacacagca----cagaatttt 424

                                                                       
Query: 58  ctgcaacacgtgtgctccaagctggcccagaggcagcccaggaacaaccatggtgtacct 117
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 423 ctgcaacacgtgtgctccaagctggcccagaggcagcccgggaacaaccatggtgtacct 364

                                                                       
Query: 118 tgccttctgaggggtgcttatcacaggaaggaaccagacgcttggatggaagggatggga 177
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 363 tgccttctgaggggtgcttatcacaggaaggagccagacgcttggatggaagggatggga 304

                                                                       
Query: 178 gacgtgcaggaagtgagcgtggtctgactagaaagaacgccaggcgtccacacacccaac 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gacgtgcaggaagtgagcgtggtctgactagaaagaacgccaggcgtccacacacccaac 244

                                                      
Query: 238 agatgttagtacctaagagcacggccagaggcttagtgagcaa 280
           |||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 243 agatgcaagtacctaagagcacggccagaggcttagtgagcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 679
Length adjustment: 9
Effective length of query: 271
Effective length of database: 670
Effective search space:   181570
Effective search space used:   181570
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)