BAC Information

Click to search

BAC

Clone NameMSMg01-177K16
Chromosome18 (Build37)
Map Location 58,723,368 - 58,723,782
singlet/doubletsinglet
Overlap geneSlc27a6
Upstream gene1700011I03Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
Downstream geneIsoc1, Adamts19, A730017C20Rik, 4833446K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177K16.T7 (MSMg01no177_k16.b1)MSMg01-177K16.TJ (MSMg01no177_k16.g1)
ACCAG371988AG371989
length7101,210
length of high quality
(start - end)
419 (52 - 470)---
definitionCHROMAT_FILE: MSMg01no177_k16.b1 PHD_FILE: MSMg01no177_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:16 2005CHROMAT_FILE: MSMg01no177_k16.g1 PHD_FILE: MSMg01no177_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGCCTCCGCGGAATCAGCTGAATTTTAAGGATGTGAAAT
CATGTGTTTTTGTTTTTGTATTTTTAATTTGCTCACTTCCTTTATTCTAG
TAAACATGACTACTCTTTGTAAACCCTCACTATTCCCTAGACTCCAGCCT
CAACGAAGATTCGGTTCCCAATCATAATGGAACTCCTCACTAACATTCCA
ATTCATTAAGAAATTATAGAAATTTAGCTGTTGGCTTATAATTCCAGATG
GCTGACTTGAAATTATGATAATTACTATAAGTAGTTGAAAGACTCAATAA
GTTCAAATGCCAGAAAGAATAGTTTAAACAGAATGTAGAGCTATTGATTT
GAAAGGCTCCTTTGCCCCCNCTTTCTGTATCTGTCTTGTCTTTCCTTCCA
GCCATCCTTGTGAGGTTTTGCTCCTGGTCAACAGCAGTCTGCACACAGTT
GGATGTGGCGTAACCGCACGCACCAATCATAACTGATTATTCGTCTTGTC
TTCTTAACTCGTGCTGTATTTGAATCTGCGACAACCCACATATTTCTACT
ATCATTTATGTTACAACCTCTTGTTCTCTGGTGAATTGTTATCCGGACTA
GTCTTTTGTTCCCTTTTATAGTTCTGCACCCTCATCTTCTCATTTTTTTA
TTCATCCCAN
ATTTACGATTGCATTGGCGCGTGAGGTCCTGAGAGGGACGGTTTTGCCGT
GGAGGAGCTGTCATCGGGGACCACCCCATTTTTCCCCACAACGCGGGAGG
TCACTGAGCGCGCGCTGGTTTCGGATGCGATGCGTACTCGGCCGGTATGC
TTGTGTGTGTTCGCCCCCCCCCTCCCGCGCGGGGGCGCGCGGCGATGCCG
GTGGTGAGAGAGCGAGTTTAGGCGTGGCCGTCTTGTGAGCGCGCGTGAGT
CCGGATCGGGTCGCTCGGGTTCGCCGGCGGCGTGGTGGTACGCGGAGTGA
TGGCGGGATGGGGCGGACATCCGTTGCGGGCGGCGGGCGTGTTTCTTCTC
TTTTTTAATTGCGCGTTTATGATTTATTACGTCTCCCATCACGCCCGCGG
GAGACCGGCGGGCGTGTGCGTGCGGTTCGCGCGCCGCGCACCAGCGTTTT
TGACCTGCGCACGCTGTGNTCGGGCCGTGGCGTNACTCCTAGTTTTGTAG
AGGACGCGTTGGCTATGTTGTTTTCATCGTGCGACACGCGCTACGATTCA
CCGGAGCCGCCCGCGATGGTGCTGAGCGCAGGTAGCGTTGTGTGTGTTGG
CACCCGCCCGCTTCTCTCTTTTTGCGGTAGTGGGTTGTGCGCGGNGTTTT
TAGTTTGCGTGTTGACGGGGGTGGGGACGCGTGGCCCCCCCCGGTGTGTT
TTTGAGATTGTACGGGCGCGTCGACGCGGGTGTNCGGCGGTGAGTGCCGG
TCGCGCTTTTTCCGGTCGTGGTCGCCAGAGATCGCGCTCTAGTTACCGTT
GGCCCGCACGCGTGTTGTGTGGGCACGCTGGCGGCGTGTGTGCTTTGTTC
TGGGTGTTTGTACTGCGCCGGTTGTATTGTTTTATGCGCTGCCGTTGGTC
CCTTTGTTTGCGGGCTGCTGTCGGTCNCGGTTGCGCTCTCGTGCTTCGCA
TTTTGTTATGTGGGCCGCTGCGCAGGTGGCGCGGTGCGCCTGTTTTATTG
TTTNTCTGTCCGCCGTCGCGCCTCCTCGGAATAAGTGCTAGTGGATTGGC
GTATCTGCGCTCGGAAGACGGCGCCGGTGTGTGAGGGCGCGGCGGCTGCC
GTTCGTCTCGCCGCCTCTGTAGTCCCGTGTCTGTATGTGATTGTGTGTCG
CGTGTTGGAGAGGCTTCTCGTCGTGTCGGCGCGTGTCTCCCGCTATCTCT
GTGNTGCGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_k16.b1 MSMg01no177_k16.b1 CHROMAT_FILE:
MSMg01no177_k16.b1 PHD_FILE: MSMg01no177_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:16 2005
         (419 letters)



>mm_chr18_58723164_58723982
          Length = 819

 Score =  727 bits (376), Expect = 0.0
 Identities = 405/415 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcctccgcggaatcagctgaattttaaggatgtgaaatcatgtgtttttgttt 64
           |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 205 gaattctgcctcagcggaatcagctgaattttaaggatgtgaaatcgtgtgtttttgttt 264

                                                                       
Query: 65  ttgtatttttaatttgctcacttcctttattctagtaaacatgactactctttgtaaacc 124
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttgtttttttaatttgctcacttcctttattctagtaaacatgactactctttgtaaacc 324

                                                                       
Query: 125 ctcactattccctagactccagcctcaacgaagattcggttcccaatcataatggaactc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcactattccctagactccagcctcaacgaagattcggttcccaatcataatggaactc 384

                                                                       
Query: 185 ctcactaacattccaattcattaagaaattatagaaatttagctgttggcttataattcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcactaacattccaattcattaagaaattatagaaatttagctgttggcttataattcc 444

                                                                       
Query: 245 agatggctgacttgaaattatgataattactataagtagttgaaagactcaataagttca 304
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 agatggctgacttgaaattatgataattacaataagtagttgaaagactcaataagttca 504

                                                                       
Query: 305 aatgccagaaagaatagtttaaacagaatgtagagctattgatttgaaaggctcctttgc 364
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct: 505 aatgccagaaagaatagtttaaacagaacgtagagctattgatttgaaaggctcctttgt 564

                                                                  
Query: 365 ccccnctttctgtatctgtcttgtctttccttccagccatccttgtgaggttttg 419
            |   ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gctgtctttctgtatctgtcttgtctttccttccagccatccttgtgaggttttg 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)