Query= MSMg01no178_h01.b1 MSMg01no178_h01.b1 CHROMAT_FILE:
MSMg01no178_h01.b1 PHD_FILE: MSMg01no178_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:14 2005
(669 letters)
>mm_chr18_82906714_82907778
Length = 1065
Score = 1222 bits (632), Expect = 0.0
Identities = 656/666 (98%), Gaps = 4/666 (0%)
Strand = Plus / Plus
Query: 4 ggaattccaggcctatctaatcagaaaataactcctgttccacagaactacacagcctca 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccaggcctatgtaatcagaaaataactcctgttccacagaactacacagcctca 263
Query: 64 tctcatgaaactcacccttgaaccctgtactgtgaagaagcactcggagtgagtaaccag 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctcatgaaactcacccttgaaccctgtactgtgaagaagcactcggagtgagtaaccag 323
Query: 124 cttatcccagtagcctcctaaggttctagaaaaaacattttcttccctatctacaaggca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttatcccagtagcctcctaaggttctagaaaaaacattttcttccctatctacaaggca 383
Query: 184 ggactcaccagttcaccacagagtgagaaactggaagacctgactacgcccttggggcct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggactcaccagttcaccacagagtgagaaactggaagacctgactacgcccttggggcct 443
Query: 244 gcaagtgtagatgggtttcagatcgagctatgaggaaacattattttataacactccctc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcaagtgtagatgggtttcagatcgagctatgaggaaacattattttataacactccctc 503
Query: 304 ctgactgaccccagacctacagctaactcctgggttgtataagaaaataggccaagcacg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgactgaccccagacctacagctaactcctgggttgtataagaaaataggccaagcacg 563
Query: 364 ccatgaggcattcacaaggcctgcagtggaaagaggcaagaagagcccagattcctacaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccatgaggcattcacaaggcctgcagtggaaagaggcaagaagagcccagattcctacaa 623
Query: 424 cacactgggctccttcttcgcagcactgtaacaggagaccgagcgtcactggagagtatc 483
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 624 cacactgggctccttcttcgcagtactgtaacaggagacagagcgtcactggagagtatc 683
Query: 484 caagagccacacacacaccctacttctacaacgcatgagtcatggggatctcccctctct 543
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 684 caagagccacacac----cctacttctacaacgcatgaatcatggggatctcccctctct 739
Query: 544 ccttggttctctacacaacctttagcacagaaggcattccactggcagcgaagaagccat 603
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 740 ccttggttctctacacaacctttagcacagaaggcattccactggcagcgaggaagccat 799
Query: 604 ctcggaggctgggggcgggtattaaatccaggctcgggttgtttgttcagtcactcttac 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ctcggaggctgggggcgggtattaaatccaggctcgggttgtttgttcagtcactcttac 859
Query: 664 agccct 669
||||||
Sbjct: 860 agccct 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1065
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1055
Effective search space: 695245
Effective search space used: 695245
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_h01.g1 MSMg01no178_h01.g1 CHROMAT_FILE:
MSMg01no178_h01.g1 PHD_FILE: MSMg01no178_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:15 2005
(288 letters)
>mm_chr18_83068027_83068713
Length = 687
Score = 414 bits (214), Expect = e-120
Identities = 269/294 (91%), Gaps = 15/294 (5%)
Strand = Plus / Minus
Query: 1 cagtttccagaatcgtgaaaaaaataacagcgtgccgttcataaatccccccagctggta 60
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 392 cagtttccagaatcgtg-aaaaaataacagcgtgccgttcagaaatccccccagctggta 334
Query: 61 ggaatttgtttgagcagcctggagagaccaaggaagcctacaacccaaagcagctgccac 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 333 ggaatttgtttgagcagcctggagagaccaaggaagcccacaacccaaagcagctgccac 274
Query: 121 tgcaggcagtgtaccttaactcagaactgtccgttggtcccagggagggagcaaacagta 180
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 273 tgcaggcagtgtacattaactcagaactgtccgttggtcccagggaggaagcaaacagta 214
Query: 181 ctgagcactcattcagc-c------aggg-actgcactggtctgtggctgggactcctat 232
|||||||||||| ||| | |||| ||||||||||||||| ||||||||||||||
Sbjct: 213 ttgagcactcatttagctcgtctggaggggactgcactggtctgtagctgggactcctat 154
Query: 233 ccttccaggcctaggcctgccgttagggacacctgaacttaaaaatgcccatgc 286
|||||||||||| ||| |||| |||||||||| ||||||||||||||||
Sbjct: 153 ccttccaggcct------gccattagagacacctgaatttaaaaatgcccatgc 106
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 687
Length adjustment: 9
Effective length of query: 279
Effective length of database: 678
Effective search space: 189162
Effective search space used: 189162
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
