Query= MSMg01no180_k02.b1 MSMg01no180_k02.b1 CHROMAT_FILE:
MSMg01no180_k02.b1 PHD_FILE: MSMg01no180_k02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:55 2005
(316 letters)
>mm_chr18_5409415_5410131
Length = 717
Score = 536 bits (277), Expect = e-157
Identities = 301/309 (97%), Gaps = 1/309 (0%)
Strand = Plus / Plus
Query: 5 gaattcctttactttttcccttca-gatatgtcttcactgtcttgcctcgtggctggaaa 63
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttactttttcccttcaagatatgtcttcactgtcttgcctcgtggctggaaa 264
Query: 64 gactggtcttactacccgccctgcacttagtcccagggtctttgtgtaattctgtggtct 123
|||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 gactggtcttactaacagccctgcactcagtcccagggtctttgtgtaattctgtggtct 324
Query: 124 aattttgctctattatttatgttgtcttattcaacttcctggtctaaacttcatagagtt 183
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 aattttgctctattatttatgttgtcttattcaacttcctgctctaaacttcatagagtt 384
Query: 184 catctttagcctacacaagttgtcatactttctaaactaggtgctggtagttcccaacgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catctttagcctacacaagttgtcatactttctaaactaggtgctggtagttcccaacgt 444
Query: 244 acaaacaccagatttaggaatgtcctttcatagaaaaagccggctactgatgcttctggg 303
|||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||
Sbjct: 445 acaaacaccagatttaggaacgtcctttcatagaaacagccggccactgatgcttctggg 504
Query: 304 tggcagcaa 312
|||||||||
Sbjct: 505 tggcagcaa 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 717
Length adjustment: 9
Effective length of query: 307
Effective length of database: 708
Effective search space: 217356
Effective search space used: 217356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no180_k02.g1 MSMg01no180_k02.g1 CHROMAT_FILE:
MSMg01no180_k02.g1 PHD_FILE: MSMg01no180_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:55 2005
(299 letters)
>mm_chr18_5512228_5512924
Length = 697
Score = 528 bits (273), Expect = e-154
Identities = 292/303 (96%), Gaps = 10/303 (3%)
Strand = Plus / Minus
Query: 1 atgatacgggtgttacaggtatgtgttatcatgcccaaacaatctaaccccc----tcat 56
|||||||||||||||||||||||||| |||||||||||||||||||| | ||||
Sbjct: 497 atgatacgggtgttacaggtatgtgtcatcatgcccaaacaatctaa----cagtttcat 442
Query: 57 atagacggctatgcccatctgatagaaaaacatagttttcaataattataatagttttaa 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagacggctatgcccatctgatagaaaaacatagttttcaataattataatagttttaa 382
Query: 117 attttgactatatactaagcaacaaaataaaactaaattttaaagggttatcaatatata 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttgactatatactaagcaacaaaataaaactaaattttaaagggttatcaatatata 322
Query: 177 ggaaatttctttgaataagaaaatattcatttctagctaactgtggtgggggatagtgaa 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaatttctttgaataagaaaatattcatttctagctaactgtggtgggggatagtgaa 262
Query: 237 aagcagagggaaaaaagatggaatctgtgcagttcagtgggaaaggtgtgtgaagctatg 296
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcagagggaaaaa--atggaatctgtgcagttcagtgggaaaggtgtgtgaagctatg 204
Query: 297 att 299
|||
Sbjct: 203 att 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 697
Length adjustment: 9
Effective length of query: 290
Effective length of database: 688
Effective search space: 199520
Effective search space used: 199520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
