BAC Information

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BAC

Clone NameMSMg01-181L02
Chromosome18 (Build37)
Map Location 31,491,644 - 31,623,255
singlet/doubletdoublet
Overlap geneEG666130, Syt4
Upstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168, Rit2
Downstream geneLOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181L02.T7 (MSMg01no181_l02.b1)MSMg01-181L02.TJ (MSMg01no181_l02.g1)
ACCAG374794AG374795
length732728
length of high quality
(start - end)
201 (131 - 331)344 (73 - 416)
definitionCHROMAT_FILE: MSMg01no181_l02.b1 PHD_FILE: MSMg01no181_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:13 2005CHROMAT_FILE: MSMg01no181_l02.g1 PHD_FILE: MSMg01no181_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,491,644 - 31,491,844)(31,622,912 - 31,623,255)
sequence
ACAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCTTTCATCTGCTGAATTTT
GGGATGAGTGAGAGGCCACTTCCTCAACCCACTGCTTTAAAATCTGTTAA
CAATCACTAACCACACAAAGTAACAAGATTTCAGATACATAAAATCAGTG
TGGTAATTATATGCAGCACCCAAGAAGATAGGTCTTTTAAAAGCTCAATA
GATAAATATGCTAAAGAGGAAGAAGAACTGTACATGATACATTATGCAAG
GATTCCTCTTAAGACACTGAGTGAATAAATTCAGTCTAGGAAGCGAAGGC
TTGAATAGTTGCACACAGTTATATATTAACCACCCCAAATTTTATTTTAC
CACAGTGTTCCACTTATATATCACCCCTAATAGCATATTATAGCCATTAT
TATCTTCTACACCCTATTTTATGTTAACTTTTTAATAATTTCCAGTATCA
TTTCTGAATCATACCTTTCTTGTTTTTCCCTTCCTCCCATTTTTTTTTCT
CCACCCCCTTTTTTTTTTTTTCCCTATTTCCACCGCCCTCCCCCCTACCT
CTCTTTTTTTTCCCCCCCCCACTCCCCCCCTTTTTTTTTTTTCCCCCCTC
ACCCCCCCCCCTCCTTTTCCTTTTTTTTACCCACTCTCCCCCCCCTCCTT
AAATTTTATTTTTCTTATTCCCCCTATTAATC
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAACAGAGGTGTCTTCAAGTCGAGAATGTATTTTGAGTGGGTG
ACTTCCTTTGAAGCACTATGTAATGGCCCTCCTAAGTCAATGGGCAATCA
GGACAAATGTCCTGATATATAAGGACATGATGAGGGATACTTAAGATATT
GATCCTGAACCAGCCAAAAGTCACAAGCATGAGGTAGAAATAACTTGGGT
TTAACCTCCCTCAATGTTTTTTATAATTGTTTAATAAGTGAGTTTTAAAA
AGACCTAACTGTCAATAATTCAACATTTCTATTATAGAGGGAGTCACTCT
ACACGATAGTTCATTTATTGTATTACCTGCTTAACACCTAGTGACAAGTA
TGTTTTACTTCACATAGTAAATTGTCACACTGCATCACATGTGTTAAGGA
GAACATGTTCCCTTCTCTTGAAAACAAATGCTCAATTTTTGCCTGGAAAT
TTACTATTACAAATCTCCTCTAATGTTATATTTTTGATATGATACTCCTT
GAAATGTTAGCCACGCACTTAGTTAAATTGACCTTCATTGTCAACCTCTG
ACATGAATTCTTTGATTCTCCTGCATTTTTTTTTTTTCCATAGTTTATCT
TTGACCTCCAAAAAATCTTTTTTATACTTTTTACCACAATTTTTATATTG
TTTCCCATCTATTTTTAATCCCTATTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_l02.b1 MSMg01no181_l02.b1 CHROMAT_FILE:
MSMg01no181_l02.b1 PHD_FILE: MSMg01no181_l02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:13 2005
         (201 letters)



>mm_chr18_31491444_31492044
          Length = 601

 Score =  381 bits (197), Expect = e-110
 Identities = 200/201 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgctttaaaatctgttaacaatcactaaccacacaaagtaacaagatttcagatacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgctttaaaatctgttaacaatcactaaccacacaaagtaacaagatttcagatacat 260

                                                                       
Query: 61  aaaatcagtgtggtaattatatgcagcacccaagaagataggtcttttaaaagctcaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatcagtgtggtaattatatgcagcacccaagaagataggtcttttaaaagctcaata 320

                                                                       
Query: 121 gataaatatgctaaagaggaagaagaactgtacatgatacattatgcaaggattcctctt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 gataaatatgctaaagaggaagaagaactgtacatgatacattatgcaagtattcctctt 380

                                
Query: 181 aagacactgagtgaataaatt 201
           |||||||||||||||||||||
Sbjct: 381 aagacactgagtgaataaatt 401


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no181_l02.g1 MSMg01no181_l02.g1 CHROMAT_FILE:
MSMg01no181_l02.g1 PHD_FILE: MSMg01no181_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:13 2005
         (344 letters)



>mm_chr18_31622712_31623455
          Length = 744

 Score =  627 bits (324), Expect = 0.0
 Identities = 339/344 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caagtcgagaatgtattttgagtgggtgacttcctttgaagcactatgtaatggccctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 544 caagtcgagaatgtattttgagtgggtgacttcctttgaagcactatgtaagggcactcc 485

                                                                       
Query: 61  taagtcaatgggcaatcaggacaaatgtcctgatatataaggacatgatgagggatactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 taagtcaatgggcaatcaggacaaatgtcctgatatataaggacatgatgagggatactt 425

                                                                       
Query: 121 aagatattgatcctgaaccagccaaaagtcacaagcatgaggtagaaataacttgggttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aagatattgatcctgaaccagccaaaagtcacaagcatgaggtagaaataacttgggttt 365

                                                                       
Query: 181 aacctccctcaatgttttttataattgtttaataagtgagttttaaaaagacctaactgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aacctccctcaatgttttttataattgtttaataagtgagttttaaaaagacctaactgt 305

                                                                       
Query: 241 caataattcaacatttctattatagagggagtcactctacacgatagttcatttattgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 caataattcaacatttctattatagagggagtcactctacacgatagttcatttattgta 245

                                                       
Query: 301 ttacctgcttaacacctagtgacaagtatgttttacttcacata 344
             |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 244 caacctgcttaaaacctagtgacaagtatgttttacttcacata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)