Query= MSMg01no181_o09.b1 MSMg01no181_o09.b1 CHROMAT_FILE:
MSMg01no181_o09.b1 PHD_FILE: MSMg01no181_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:29 2005
(490 letters)
>mm_chr18_52114289_52115175
Length = 887
Score = 772 bits (399), Expect = 0.0
Identities = 474/527 (89%), Gaps = 49/527 (9%)
Strand = Plus / Plus
Query: 4 ggaattctcatgctatcc-ggcaagcataaccaaaccaagaaacaggatgccttaattag 62
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ggaattctcatgcta-cctggcaagcataaccaaaccaagaaacaggatgccttaattag 222
Query: 63 ctagacaagagaaaattaagactggtttcagtttttctgcaatctatcggtaatgtagtc 122
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 223 ctagacaagagaaaattaagactggtttcagtttgtctgcaatctatcggtaatgtagtc 282
Query: 123 agagaag--------------gaaaaaaaaaaccaaaaaaaaaaaacctctgccagcaca 168
||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 283 agagaagaaaaaaaaaaaaaaaaaaaaaaaaa--aaaaaaaaaaaacctctgccagcaca 340
Query: 169 caggcaggaaacagtaaaacttgtgccaacattatgtaatcatctgcctgccttaactac 228
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 caggcaggaaacagtaaaacttgtgccaacattatgtaatcatctgcctgccttaactat 400
Query: 229 gaaaacccataattttaaaatccacagttatgctgaaaataactgaatgtgtgtgtgtgt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gaaaacccataattttaaaatccacagttatgctgaaaataactgaatgtgtgtgtgtgt 460
Query: 289 gtg----------------------------aattttaactcagcctaaatgttctttct 320
||| |||||||||||||||||||||||||||||
Sbjct: 461 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaattttaactcagcctaaatgttctttct 520
Query: 321 attagtttagctaatgaaactataatctattaaaaaatatgtcatatggctacattgctg 380
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 521 attagtttagctaatgaaactataatctattaaaaaat--gtcatatggctacattgctg 578
Query: 381 ttatatatgagacaaagttaaaaatacaatgatttttaactgtcgttttctagaataata 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ttatatatgagacaaagttaaaaatacaatgatttttaactgtcgttttctagaataata 638
Query: 441 taattattttttacaaatagcataattattttgagttagatttttaa 487
||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 639 taattattttt-acaaatagtataattattttgagttagatttttaa 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 887
Length adjustment: 10
Effective length of query: 480
Effective length of database: 877
Effective search space: 420960
Effective search space used: 420960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no181_o09.g1 MSMg01no181_o09.g1 CHROMAT_FILE:
MSMg01no181_o09.g1 PHD_FILE: MSMg01no181_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:29 2005
(203 letters)
>mm_chr18_52264786_52265388
Length = 603
Score = 358 bits (185), Expect = e-103
Identities = 198/203 (97%)
Strand = Plus / Minus
Query: 1 attggagaaatgacaacctccttaaaaaaacagtgcttggataactggataagtgaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 attggagaaatgacaacctccttaaaaaaacagtgcttggataactggataagtgaaaca 344
Query: 61 tgatccacttgtactcctcatgtaaaaggggattggaaatggatgtaagatctgaggata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgatccacttgtactcctcatgtaaaaggggattggaaatggatgtaagatctgaggata 284
Query: 121 agatttaagatggtgaaatttctctcanaacactantgtatgcaaggatgttctgaacat 180
|||||||| |||||||||||||||||| ||||||| |||| |||||||||||||||||||
Sbjct: 283 agatttaaaatggtgaaatttctctcaaaacactagtgtaggcaaggatgttctgaacat 224
Query: 181 gattcctgaagggataggttaac 203
|||||| ||||||||||||||||
Sbjct: 223 gattccagaagggataggttaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 603
Length adjustment: 8
Effective length of query: 195
Effective length of database: 595
Effective search space: 116025
Effective search space used: 116025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
