Query= MSMg01no182_h01.b1 MSMg01no182_h01.b1 CHROMAT_FILE:
MSMg01no182_h01.b1 PHD_FILE: MSMg01no182_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:11 2005
(342 letters)
>mm_chr18_85141954_85142695
Length = 742
Score = 563 bits (291), Expect = e-165
Identities = 338/375 (90%), Gaps = 33/375 (8%)
Strand = Plus / Minus
Query: 1 agagctgaaaggctggagttaaatctggaccagcagctgaagcaggcgctgggcatcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 agagctgaaaggctggagttaaatctggaccagcagctgaagcaggcgctgggcatcaga 583
Query: 61 atcatag---------------------------------gtgtagttccaaagacctgg 87
||||||| ||||||||||||||||||||
Sbjct: 582 atcataggtgcggctgccaggtctttttgggatacatcctgtgtagttccaaagacctgg 523
Query: 88 acttaatgctcttaatgccattttgattttattagtaattttgcaacaggccatacaaac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 acttaatgctcttaatgccattttgattttattagtaattttgcaacaggccatacaaac 463
Query: 148 taaagagctgtgctcaatagctagtctctgcctctgggtaagctctcacagaagaaaatc 207
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 462 taaagagctgtgctcaatagctagtctctgcctctgggtaagctctcacagaagccaatc 403
Query: 208 acttgcaaagtttacatctcattagacgtacagagcaggaaacatgtaccatgtgctcct 267
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 402 acttgcaaagtttacatctcattagatgtacagagcaggaaacatgtaccatgtgctcct 343
Query: 268 gatgaagacgccataagtgcagtgcccgctctaagctttctaaataatcaccacccagga 327
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 342 gatgaagacgccataagtgcagtgccctctctaagctttctaaataatcaccacccagga 283
Query: 328 aggacaccactgctt 342
|||||||||||||||
Sbjct: 282 aggacaccactgctt 268
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space: 244089
Effective search space used: 244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no182_h01.g1 MSMg01no182_h01.g1 CHROMAT_FILE:
MSMg01no182_h01.g1 PHD_FILE: MSMg01no182_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:11 2005
(287 letters)
>mm_chr18_85012151_85012837
Length = 687
Score = 501 bits (259), Expect = e-146
Identities = 277/287 (96%), Gaps = 7/287 (2%)
Strand = Plus / Plus
Query: 1 tcaaaagaggagtctcaaatgtctgagaagcacttaaagaaatgtcccatgtctttagtt 60
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 201 tcaaaagaggagtctcaaatgtctgagaagcacttaaagaaatgttcaatgtctttagtt 260
Query: 61 caaaacatgatattaaaaaggcatacttatatgcagattttctgtgttcacatctaaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaacatgatattaaaaaggcatacttatatgcagattttctgtgttcacatctaaatt 320
Query: 121 ggaggtccattttagtagaaaagtttatttgataaggaaagcagggaaagaagtggtggg 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagatccattttagtagaaaagtttatttgataaggaaagcagggaaagaagtggtggg 380
Query: 181 gcaaatatttcttagagtatattttttatttgcagaaagttaagagcggggttgattttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaaatatttcttagagtatattttttatttgcagaaagttaagagcggggttgattttc 440
Query: 241 ttttcttttttttttttctttttttaagatttatttatttatttata 287
|||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttt-------ttttttctttttttaagatttatttatttatttata 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
