BAC Information

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BAC

Clone NameMSMg01-183E23
Chromosome18 (Build37)
Map Location 84,958,248 - 84,958,537
singlet/doubletsinglet
Overlap genenone
Upstream geneTshz1, Zadh2, LOC669856, Zfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik
Downstream geneCyb5, Fbxo15, 1700034H14Rik, LOC100039765, LOC665382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183E23.T7 (MSMg01no183_e23.b1)MSMg01-183E23.TJ (MSMg01no183_e23.g1)
ACCAG375942AG375943
length675735
length of high quality
(start - end)
282 (40 - 321)292 (67 - 358)
definitionCHROMAT_FILE: MSMg01no183_e23.b1 PHD_FILE: MSMg01no183_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:17 2005CHROMAT_FILE: MSMg01no183_e23.g1 PHD_FILE: MSMg01no183_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAA
GTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTC
TTATTGACGGTGTCTTTTGCCTTGCANAAACTTTGGAGTTTCATTAGGTC
CCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCA
GGAATTTTTCCCCTGTGTCTTTATCTTCAAGGCCTTTCCCCATTTTCTCC
TCTATTAATCGATCCCCCCCCCCCCCCCNNNNGAAGTCTTTGGATATTTT
TCTTTTGTCCCTCCCCACAAAAAAAAAAAAAAAATCCCCAGGAGCGCCCC
CCTCCCNNNNNACCCCAAACCNTTCCCCCCTGGTTTTGTGAGCCTGGGTT
TTCCCCCNAAACTTAAAATTGCTCGGAAACCCTTTTTGTTTTCCCCCCTA
ANATTTTTATTTCACCCTATATCTCCCCGGTGGGGGGGCATAATATTTTN
TTTTNNANTAATTTTTTCCCAACAAAGTTTTNNNTNTCTAGTTGGTACCC
ANNNNNNTNTAGGTTGTGTGTTTTT
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCATCATGGTCTACTTGGTGAGCCAATGAGTTATT
GGGCTTTGAAGAGCTCACTTTACAAGATCATAGCAGCCACACCACCAGAA
AATTTTATCCCGACATGGAAGATGACATCCTCATAGCTGGATGGAGTCCC
TCTTCATCTAGCTTTCCATACATCGAATACTCAACTACCTCCTAAGACCA
TGAGACTGCATGCGATTACATCAGAATTGTATGTGGGAGGTTCAGGAAGG
GGCAACTGAAGGGTCATTAAGTGAGGATACAATGAACCTTTTCACCCCCT
CTGATGACTAAGATGTCTGCTTTGCTTGGATTATAGGGCTCTACAACAGA
GGAGAACAAAGCTCTGGAAACCCCAAGTAGATCTGTACACTGTGTGGAAT
ATCCATCTAAGTGTTAATTAATGATTAGGGGAGTGCATGTTGAGTGGTCT
TCCCAAGAGACCCACTGTTAGTTCTTTTAGGGATCCTACTGCCCTGTACC
TTGTATCTTGTGTACCTTGTTGTAAGACTCTTCAGTTTTGTAATTGTTCT
GAGCTCTGCTGGGCTTCAGAGCCTGTCTAGTGTGGGTAAAGGTAAAGTAG
CACTAGCCCATGCATCCTTGAAGACAACCGAGGCTGTAAGAAGAAAGTGG
CTTGCTTAGGCCACTAGAGAGCAAACCAGGACAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_e23.g1 MSMg01no183_e23.g1 CHROMAT_FILE:
MSMg01no183_e23.g1 PHD_FILE: MSMg01no183_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:17 2005
         (292 letters)



>mm_chr18_84958048_84958738
          Length = 691

 Score =  501 bits (259), Expect = e-146
 Identities = 283/291 (97%), Gaps = 1/291 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catcatggtctacttggtgagccaatgagttattgggctttgaagagctcactttacaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 490 catcatggtctacttggtgagccaatgagttattgggctttgaagagctcac-ttacaag 432

                                                                       
Query: 61  atcatagcagccacaccaccagaaaattttatcccgacatggaagatgacatcctcatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 431 atcatagcagccacaccaccagaaaattttatcccgacatggaagatgacatccttatag 372

                                                                       
Query: 121 ctggatggagtccctcttcatctagctttccatacatcgaatactcaactacctcctaag 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 371 ctggatggagtccctcttcatctagctttccatacattgaatactcaactacctcttaag 312

                                                                       
Query: 181 accatgagactgcatgcgattacatcagaattgtatgtgggaggttcaggaaggggcaac 240
           ||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||| 
Sbjct: 311 accatgagactgcatgcgattatgtcagaattgtatgtgggagattcaggaaggggcaat 252

                                                              
Query: 241 tgaagggtcattaagtgaggatacaatgaaccttttcaccccctctgatga 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 tgaagggtcattaagtgaggatacaatgaaccttttcaccccctctgatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 691
Length adjustment: 9
Effective length of query: 283
Effective length of database: 682
Effective search space:   193006
Effective search space used:   193006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)