Query= MSMg01no183_f18.b1 MSMg01no183_f18.b1 CHROMAT_FILE:
MSMg01no183_f18.b1 PHD_FILE: MSMg01no183_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:21 2005
(577 letters)
>mm_chr18_87304108_87305084
Length = 977
Score = 917 bits (474), Expect = 0.0
Identities = 545/574 (94%), Gaps = 13/574 (2%)
Strand = Plus / Minus
Query: 5 gaattctctcactcttatctgtgatgaaagtgggactgtagtctagagtgtactctagta 64
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 gaattctcccagtcttatctgtgatgaaagtgggactgtagtctagagtgtactctagta 810
Query: 65 tctatgcttctactacatttttgtaacaggtgaaatgaccaaaaaaacaaaaaacaaaac 124
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tctatgcttctactacctttttgtaacaggtgaaatgaccaaaaaaacaaaaaacaaaac 750
Query: 125 aaacaaacaaaaaaacaaacaaacaaaaaccctgaaagcttaggtgtatttgttctaaaa 184
|||| |||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 749 aaac--------aaacaaacaa--aaaaaccctgaaagcttaggtgtatttgttct-gaa 701
Query: 185 atatgtagataatattaaatgttaattaaaaattataatcctggaagggacaggtagggt 244
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 atatgtagataatactaaatgttaattaaaaattataatcctggaagggacaggtagggt 641
Query: 245 acaacatatgtatagacatataggattatagggaactaaattcctcaaaatacagcaaca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 acaacatatgtatagacatataggattatagggaactaaattcctcaaaatacagcaaca 581
Query: 305 tagtcatgtagaaggtagagataattagatcaagctgccctttgcagaaaaagctggagt 364
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 taatcatgtagaaggtagagataattagatcaagctgccctttgcagaaaaagctggagt 521
Query: 365 ggacgaaaatctgataacatggaaagttctgagacaattctcctctattactccaagtgt 424
||| |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 520 ggaggaaagtctgataacatggaaagttgtgagataattctcctctattactccaagtgt 461
Query: 425 agtctgaatgcagattttgagattacaggtgggaggatgctgcagacgaaaacctcactt 484
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 460 agtctgtatgcagattttgagattacaggtgggaggatgctgcagaggaaaacctcactt 401
Query: 485 gggtcctcgatccacaggcgaaaaatgg-gttccggttataggtgggcaaggagtctgtg 543
||||||| ||||||| ||||||| | | |||||||||||||||||||||||||||||||
Sbjct: 400 gggtccttgatccacgggcgaaac-tcgagttccggttataggtgggcaaggagtctgtg 342
Query: 544 agaaggaggggtgacaaacagacatgacacaagg 577
||||||||||||||||||||||||||||||||||
Sbjct: 341 agaaggaggggtgacaaacagacatgacacaagg 308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no183_f18.g1 MSMg01no183_f18.g1 CHROMAT_FILE:
MSMg01no183_f18.g1 PHD_FILE: MSMg01no183_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:21 2005
(282 letters)
>mm_chr18_87189875_87190556
Length = 682
Score = 538 bits (278), Expect = e-157
Identities = 281/282 (99%)
Strand = Plus / Plus
Query: 1 actggatttgtgtaaaaatgagtttccttatgaaaatcagttactaagccacataagtaa 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 actggatttgtgtaaaaatgagtttccttatgaaaatcagttactaagccacataaataa 260
Query: 61 ctgagtttggcctagtacattttatatgtacctggatgctgtccactggatgttgacatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgagtttggcctagtacattttatatgtacctggatgctgtccactggatgttgacatc 320
Query: 121 tggattccacaattacacagagaggcaagtgtatctacacttatacacatgcataacact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggattccacaattacacagagaggcaagtgtatctacacttatacacatgcataacact 380
Query: 181 taccccccaacacacacatcagatccattattttttttaaatccctatgaatttaagaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taccccccaacacacacatcagatccattattttttttaaatccctatgaatttaagaaa 440
Query: 241 atgaatgtaaaaccgttagagcctactgcctcagtttagaaa 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgaatgtaaaaccgttagagcctactgcctcagtttagaaa 482
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
