BAC Information

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BAC

Clone NameMSMg01-183J14
Chromosome18 (Build37)
Map Location 59,194,022 - 59,194,311
singlet/doubletsinglet
Overlap geneAdamts19
Upstream geneFbn2, Slc27a6, Isoc1
Downstream geneA730017C20Rik, 4833446K15Rik, LOC667549
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183J14.T7 (MSMg01no183_j14.b1)MSMg01-183J14.TJ (MSMg01no183_j14.g1)
ACCAG376139AG376140
length703792
length of high quality
(start - end)
300 (65 - 364)161 (80 - 240)
definitionCHROMAT_FILE: MSMg01no183_j14.b1 PHD_FILE: MSMg01no183_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:39 2005CHROMAT_FILE: MSMg01no183_j14.g1 PHD_FILE: MSMg01no183_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXATAATCAGTATCTGTCATGTGTAGGACTTGCCTTCC
TAATTCTAAGCAGAAGAAAAGCACATTTGGGTAGAATTCAAGAGATGTGA
GGGTCATTTCTGACGGCTGCATTGCATTCAAGCATATTGACCCAACTTTT
AAATGGGAAATGAACAGATAGGCAGATAGGTGTTAATATGATGAAATAAT
GTCTTTGAGGGTACAGGTCAGATGAAAAATGTAGAGATAGCGCTAGCTAT
AGTTAGTGTACTCTGATATGTTAGGCTTTTGTCATTTAGGGTGTGTGTGT
GTGTTGATTGCNNCNNTANANNCNTGACTAAAACATCANTATATAAAATA
AACTATACCCCCCCGGTTTTGTGATAAATATGAATATTTCTAAGGATACC
TGTACCCTAGCTAACTACACAACCCCAAATATAGACTTTAAATAGCAGGA
GACGTTAATGTTATTATAACATCTGACACAGAACTTGGAGTTCATCTGAG
GCCTCGTATATAGACTGCCATCCCTCATCTGCCTCTATGTTAGCCTCTAT
TCCCCTTGATTTTTCAATGTTCCTCTGGCGGCCTACGCGCATCCCAGCAT
TTATTTTTTTTCTCGCCCCTTTTCCAGCCCGGCTTTCTTCTCTCGCTCTT
GAT
CTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTGTGAGCCCCA
TTTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCT
TTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGATAAAGAT
CCTTTCCCAATTTGTTGGCGGTCTTTTTGTCTTATTGATGGCGTCCCTTG
TCTCTGTTACCCTTTGGAGTTTCATTATCTTTCATTTTTTCCCTCTTCAT
TTTACTTCGCTCGCCTTTTTTTTTTTTCCCATCCCGTCATTCACCTTCTG
TTTCATCTTTTTTTTTTCTCCCCCCCCCCCCCCCCCTATCCTCTCTGTTT
CTTTTCTCCCCCATCCGTGCCCCCCCCCAAAAAAAAACACTACCCTCCCT
ATTTCCCCCATTCCTTTATCTATTTCCCCCCGCGTTTCCCCTCCTTCTTT
TTCTATCCCCCCCTCCTTCCTCCTCCCTTTTTCTTTATTTTCTTTTCTCT
CTCTTTCCAATATTTTCATCGCTTCCTATTATCCCTCTTTCTCCTCCCTT
TTTCGCTTTATCTCCCTCACTCTATATTATCACCATCTGTTCCAGTCCAT
CTTAATCCTAATTATTCCCTCCTCTCCCTTTTTTTTCCCCCTTACTTTCT
CTCCCCCCCTTTTATTTCTTTTCTTCCTCTTCATACCCCCCCCCCCCCCT
ATCGTCTTTTTTTTTCTCCATCTCGAACTTTTTTCCGCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_j14.b1 MSMg01no183_j14.b1 CHROMAT_FILE:
MSMg01no183_j14.b1 PHD_FILE: MSMg01no183_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:39 2005
         (300 letters)



>mm_chr18_59193822_59194521
          Length = 700

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataatcagtatctgtcatgtgtaggacttgccttcctaattctaagcagaagaaaagcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 ataatcagtatctgtcatgtgtaggacttgccttcctaattctaagcagaagagaagcac 260

                                                                       
Query: 61  atttgggtagaattcaagagatgtgagggtcatttctgacggctgcattgcattcaagca 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 atttgggtagaattcaagagatgtgagggtcatttctgacagctgcattgcattcaagca 320

                                                                       
Query: 121 tattgacccaacttttaaatgggaaatgaacagataggcagataggtgttaatatgatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattgacccaacttttaaatgggaaatgaacagataggcagataggtgttaatatgatga 380

                                                                       
Query: 181 aataatgtctttgagggtacaggtcagatgaaaaatgtagagatagcgctagctatagtt 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataatgtctttgagggtactggtcagatgaaaaatgtagagatagcgctagctatagtt 440

                                                             
Query: 241 agtgtactctgatatgttaggcttttgtcatttagggtgtgtgtgtgtgt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgtactctgatatgttaggcttttgtcatttagggtgtgtgtgtgtgt 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)