BAC Information

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BAC

Clone NameMSMg01-185K07
Chromosome18 (Build37)
Map Location 70,665,013 - 70,665,316
singlet/doubletsinglet
Overlap genenone
Upstream geneTcf4, Ccdc68, Rab27b, 2310002L13Rik, 4930503L19Rik, Stard6
Downstream genePoli, Mbd2, EG668032, Dcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185K07.T7 (MSMg01no185_k07.b1)MSMg01-185K07.TJ (MSMg01no185_k07.g1)
ACCAG377573AG377574
length741718
length of high quality
(start - end)
307 (45 - 351)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no185_k07.b1 PHD_FILE: MSMg01no185_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:24 2005CHROMAT_FILE: MSMg01no185_k07.g1 PHD_FILE: MSMg01no185_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACAGCTCACTTTGTCACTCGAGGGAGGTTCCTGTGACACTGGGTA
GAGTGGAGATAGAGTCCTTTCTGGAGCGGTTACAGGAAAAGCCAAGTGAT
GACGCTTTTCTCTGAGCAACTTGACCTTTCGAAAACACTGAGACTTTACT
AAATACGGGCCCCCTGAAGAACGAAGGTGTAGTTTAGTCACGTGAGGATG
AACTATAATTGGGCAACTATGTGCTTATAAGCAACAGGTGTGCAATGAAG
CAAGAAATAAAATCCAGAAGTTTTACTTTCCCAATTAGCAGTTATAGAGT
GGCAANACGTATAGAGAACGCATCACATTAAGTGTATGCATTAGAANAGG
ATATATATGTATCGAACATGCTACTTATGGANAAGGTACAGAAATTAAAA
ATGGGGGCATTTTTACATACCCATTTATTTTTAGTAACCCNNNAGAACTG
GAAAAAAAATCTGGGTNNNNGGGCATCACGTNTNNNTGNNNNNTNNNNNT
NTTGCTTCTCCAGGNNAACAAAAATGGTTGGAAAGGGTAGTCCGGAAAAA
AAATTTTTTCTCTCAGTTGGGCCTAAAAAGGGAAAAGTCCCAAGTTGGGG
CCTTGGGCTGTTTNATTTCNCTCCTTTCTTTAGCCNNNNNNNNTTTCNCN
NNCNNNTGNNNTGGTGAAAAAATAACACCTCTTGGCCCCTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGCCAGCGAGATACTAGCTCGGGC
AAGAAGTGGCGCCGAGAAACCCGGGAATTTATCATCACCAGGCGCTGATA
GGAGACCCTCCCCCCCACCCCACCCCCCGTTTCACAGGGCGGGTTCAGAA
CTACGGGACACTTTACAGCTCTGCAAGGTACATTCGGTCTTGAACTTTTT
CCAGCGTTAGAAGCCTTTCTGTTCCTTTTCACAGGGCTCGTTCTTTTTTC
TTTTGATTACATACTGTTTCCACAGGTGGAATTGCTAACTGGTGTTCAGT
CGAGGTCAGTGTTTGGTTAGCCCCCCCAAGAAGATAGCATGGGGGCCTCC
CACTCTGTGGTGACTGCCTTACGGTCGGTCCTGAAGCAGCATGGCTTGAA
AGTCACCACCAAGACACTAGAAGGCTTTGTAAAAGAGGTAGATCGCATAG
CACCGTGGTTTGCGTGCTCAGGGTCCTTAACTATCCCCTCTTGAGAGAAA
CTCAAGGGAGATTTAGTTAGGGAACTGGAGAACGGCAAACTTAAAGCGGG
AACCATGCCATTGGGGAAGCTGATACGATCATGCTTAAAGGATGAGGAAT
GTCAACAAGTGATTAAGGCAGGGCAGAGAATTCTGGATGAAATTCAAGAC
AGTCTATCAGAGGTAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_k07.b1 MSMg01no185_k07.b1 CHROMAT_FILE:
MSMg01no185_k07.b1 PHD_FILE: MSMg01no185_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:24 2005
         (307 letters)



>mm_chr18_70664810_70665516
          Length = 707

 Score =  505 bits (261), Expect = e-147
 Identities = 294/305 (96%), Gaps = 2/305 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaacagctcactttgtcactcgagggaggttcctgtgacactgggtagagtgga 63
           ||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||
Sbjct: 507 ggaattcaacagctcacttcgtcacttgagggaggttcctgtgacattgggtagagtgga 448

                                                                       
Query: 64  gatagagtcctttctggagcggttacaggaaaagccaagtgatgacgcttttctctgagc 123
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gatagagtcctttctggagtggttacaggaaaagccaagtgatgacgcttttctctgagc 388

                                                                       
Query: 124 aacttgacctttcgaaaacactgagactttactaaatacgggccccctgaagaacgaagg 183
           |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 387 aacttgaccttttgaaaacactgagactttactaagtacgggccccctgaagaacgaagg 328

                                                                       
Query: 184 tgtagtttagtcacgtgaggatgaactataattgggcaactatgtgcttataagcaacag 243
           ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 327 tgtagtttagtcatgtgaggatgaactataattgggcaactacgtgcttataagcaacag 268

                                                                       
Query: 244 gtgtgcaatgaagcaagaaataaaatccagaagttttac-tttcccaattagcagttata 302
           ||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||
Sbjct: 267 gtgtgcaatgaagcaagaaataagatccagaagttttacatttcc-aattagcagttata 209

                
Query: 303 gagtg 307
           |||||
Sbjct: 208 gagtg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)