BAC Information

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BAC

Clone NameMSMg01-186A05
Chromosome18 (Build37)
Map Location 87,360,475 - 87,360,727
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719
Downstream geneLOC383318, Ppia-ps18_1039.1, LOC329008, LOC100039961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-186A05.T7 (MSMg01no186_a05.b1)MSMg01-186A05.TJ (MSMg01no186_a05.g1)
ACCAG377830AG377831
length797766
length of high quality
(start - end)
200 (46 - 245)253 (76 - 328)
definitionCHROMAT_FILE: MSMg01no186_a05.b1 PHD_FILE: MSMg01no186_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:52 2005CHROMAT_FILE: MSMg01no186_a05.g1 PHD_FILE: MSMg01no186_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCTCCCCTTAGGGGCTGCAATCTTTATTCCAACTCTTCTATAAG
AGTTCTCCAGCTCCATCCACTGTTTGGCTGTGGATGTCTTTGTCCATCTG
AGTCAGCTGCTAGTTGGAGCCTGTCAGAGGACAGCGATGCTATACACCTG
TCTTCAAGCATAACAAAGTATCATTAATAGTGTCAGGGATTGGTNNGAAT
ACNNCCATGGGNTANNTGGGGTCCTCAAGGTTGGTTGGCCATTACCTTAG
TTTCTGCACAATTCCCTGTCTTTGAATTTTTTGTAGACATGATAAATTTT
GGGTTAAAAGTTTTGTGGNTACGGTGGTTGTTTTTTATTGGCCCCCCCCC
ACCACGTTCCTGGCCTTGGGATTTCCAGGGAAGGTGGGTTCCTTGGGTCC
CCAGGCCCCTTAATCCCAAAAAGATGTGGAACTTATCAGTTTAAAGGATT
CCCCCCCATATTTTCACTTCTCATTGGCNNNNNNNNNNNNNNNNNNNNNN
NNNTTGCGTTCGAGAGGGNTGANNNNNNNNNNNNNNNNNNNNTTGTTCTA
GAGTTTCTAGTGCCTCTCCTTCCCTNNNCAGGAGGGGGTGCTAAATATAT
GCTTTTTCNTCGGTAGTGGGGTGGAAGCATGCTCCTATTGGCTATTTTTT
CACCAACATCNCGCTCTACTCAAATAACCCCCTACCTCCCACTCCCGNNC
CGTTGATAACATTTTATNCTCTAATATCTCAATAGTTTATCGCTTTC
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTGTTTATCTTTATAACCAAGGAT
ATAGAATCTTATGTGGAGACCCAGAATCCTCAGTAAGAGAGAGATAAAGA
GCATACTCCTGCAAACTGTGAAAACCTTGTATCCTGCCGTTCCTTCATTA
CTCAATTCATGCTCTCTTCTTAATTATTGCCACACCCATACATGCAAACA
CATACATACACACACCCTGCTGACTCCATTTAGTATTGTGCGTATCTGTG
TAAAGTTAACCACTTGGAACTGCATGAACTATCAGGAAATGTCCGTGGAG
AAGATTGACTACCTTTCATAATGGGCATTTATTAACTTCAGATATTCGTC
TAAGGGTGGGGCCTTGTGATATGTCTCCCATATAATTTGGGCTTCCAACC
GATGTCATCATTGCCCAGGTCTTGTTTCAGCAACCATAGTGTCATTTCAT
GGGTACAAGTTCTTGTCACATATATAAGACCCTTTGTAGACGTGCTTAGC
CTCTGGCTTTTTGAATGTTTCTCTGCATCCAGAGATGAACCCTAGGTGTA
GAAGTTGTGTTGTAGATGTATTTACTAGGATTGTTTCACCTCTCTCAATA
GTTCGCTACTTGTAATCCAGGGGTATTTTTCTTTTTTTACCTTAGTATTG
TTGTCCTATGTACACTTTTTTTAACTGTTCCCCACCATCTTTTAGTTATT
CACCCGTATACTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no186_a05.g1 MSMg01no186_a05.g1 CHROMAT_FILE:
MSMg01no186_a05.g1 PHD_FILE: MSMg01no186_a05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:52 2005
         (253 letters)



>mm_chr18_87360275_87360927
          Length = 653

 Score =  474 bits (245), Expect = e-138
 Identities = 251/253 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgtttatctttataaccaaggatatagaatcttatgtggagacccagaatcctcagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 attgtttatctttataaccaaggatatagaatcttatgtggagacccagaatcttcagta 260

                                                                       
Query: 61  agagagagataaagagcatactcctgcaaactgtgaaaaccttgtatcctgccgttcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagagagataaagagcatactcctgcaaactgtgaaaaccttgtatcctgccgttcctt 320

                                                                       
Query: 121 cattactcaattcatgctctcttcttaattattgccacacccatacatgcaaacacatac 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattactcaatttatgctctcttcttaattattgccacacccatacatgcaaacacatac 380

                                                                       
Query: 181 atacacacaccctgctgactccatttagtattgtgcgtatctgtgtaaagttaaccactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atacacacaccctgctgactccatttagtattgtgcgtatctgtgtaaagttaaccactt 440

                        
Query: 241 ggaactgcatgaa 253
           |||||||||||||
Sbjct: 441 ggaactgcatgaa 453


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)