BAC Information

Click to search

BAC

Clone NameMSMg01-190D20
Chromosome18 (Build37)
Map Location 28,321,118 - 28,321,280
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665646
Downstream geneEG271505, EG625997, BC051408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190D20.T7 (MSMg01no190_d20.b1)MSMg01-190D20.TJ (MSMg01no190_d20.g1)
ACCAG380653AG380654
length706816
length of high quality
(start - end)
306 (23 - 328)163 (128 - 290)
definitionCHROMAT_FILE: MSMg01no190_d20.b1 PHD_FILE: MSMg01no190_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:25 2005CHROMAT_FILE: MSMg01no190_d20.g1 PHD_FILE: MSMg01no190_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTTAATTCTGTCCC
CCATTTTATTGTATATTTTATTTATTTATACTTCAAATGGTATCCTTTTT
TCTGATTTCCCCTCCACAAACCCCATATATCATCCTGAGTGAGGTAAATC
ACTGAAAAGTAGATATTAGCCCCAGCATTCAGAATACCCATGATACAATC
CACAAGCCATATGAAACTTAATAAGAAGGAAACCCAAATTGTGATTACTT
CAAACTTACATAGAAGAGAGAGCAATATAATCACAAGGGGTAAAGGGAGG
AATGGACCTGGGAGGAAGAGAGGAGTGGGAGGGAAAAATTTTTTTTTTTG
ATCCCCCCCCCCCCAGGTATAGGAAGGAATGCATAATGTCACCAAATTCG
TTAAAAATGAGAAACAATGGTGTATGTGAAACTGGACGTAGCCACTAAAA
ACTCTCAGGCTCCCAAGACTCAACAGTGATGACTTGAGTCAAAATACCCA
ACAAATGTCATATAGAACCTATTGACACCACTCAGTCTAAAACACAGGCA
CGTTATCTATTTGATATATGGGGCCCCCCATTTTTTTTTTGACCTTTTTT
TCCCCCCTGTTTTTTTTTTCACGGATCCTCGCGACTTTTTACGAACATTA
GTTGAAAAAACGCGCCTTTTAAAACTGCTCCCTTTTATTGTTTTCATGCC
CCCTGT
TTATACATCTGTATAATAACGACAACAATCCCTCACCCCCTACNNNACCC
AGCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTATTCAAGTTCAAAGATGAAGA
CCAGCGAAAATAGTAGGAGCCTAACAAACCATAATGGAGGAAGGGATGCA
TTCTGTCTAACCTGGGCACATAGTTCTCAGTATTCAAAATGACTGCTTGA
TTCTCTCTCTAGGATATCTATTGAAGGGCTAATTCTGATCTCATCTCTGG
GTATCTCTAGCGATGGAGAGGAAGGCAAATCTATCGGATCCATTCTATCG
CAGACCTATTATACCAATGAGAAAGAATTGCAGTTTATGAGGAAGCAAAG
ATAACCCCATAGTGAATTTTTTTTACGCCCCCCCCCCCCCAAGATAAATC
TCTATGTAGATATTCTGTAAATTGGATAAGTACAACGTCCACCCCATTTT
TTTACGCCTGTTTAGACCCCACGAGGGTAAAATTAATGCCAAATTAATCT
AGTCATTCGTAGTGAGACACCTTCTGTTGATCCGCAGAATCGCTCTATCT
GGATCCTGAGGAACCAAACTTGAGTGTATCAAGTAATGTGATCCCATTCC
TGCTATGAATGCCATGCATTACGCATTTTTGGGTTCATGCTGAAAATGAC
ATAACAGCAATCTGTACCTTTATGTGTAAAAATTTTTATGAAAGGCGTCC
CACCTGGCAGGATTTAGATTATTTAGGGACACGATTTTTAGTGTACACAC
AACGCATTCACTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_d20.g1 MSMg01no190_d20.g1 CHROMAT_FILE:
MSMg01no190_d20.g1 PHD_FILE: MSMg01no190_d20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:25 2005
         (163 letters)



>mm_chr18_28320918_28321480
          Length = 563

 Score =  284 bits (147), Expect = 1e-81
 Identities = 159/163 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctattcaagttcaaagatgaagaccagcgaaaatagtaggagcctaacaaaccataatgg 60
           ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct: 201 ctattcaagttcaaagatgaagaccagtgaaaatagtagaagcctaacaaaccataacgg 260

                                                                       
Query: 61  aggaagggatgcattctgtctaacctgggcacatagttctcagtattcaaaatgactgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 aggaagggatgcattctgtctaacctgggcacatagttctcagtattcagaatgactgct 320

                                                      
Query: 121 tgattctctctctaggatatctattgaagggctaattctgatc 163
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgattctctctctaggatatctattgaagggctaattctgatc 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 563
Length adjustment: 8
Effective length of query: 155
Effective length of database: 555
Effective search space:    86025
Effective search space used:    86025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)