BAC Information

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BAC

Clone NameMSMg01-191L10
Chromosome18 (Build37)
Map Location 88,959,622 - 88,959,904
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003
Downstream geneLOC623208, Socs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191L10.T7 (MSMg01no191_l10.b1)MSMg01-191L10.TJ (MSMg01no191_l10.g1)
ACCAG381631AG381632
length732727
length of high quality
(start - end)
312 (46 - 357)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no191_l10.b1 PHD_FILE: MSMg01no191_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:26 2005CHROMAT_FILE: MSMg01no191_l10.g1 PHD_FILE: MSMg01no191_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCATATTGGTTCCCTGAACTGTAGAGTGAGGGCTATTATGGTTGG
AAAGGCCAAATGGAAGCCTTTAGAGTTGCCTCTACCAAAGAAAATAGTGA
ATCAAAAACAGTATCGTATTCCTGGAGGAATTGCAGAAATTACTGCCACT
ATCAAGGACTTGAAAGATGCAGGGGTGGTGGTTCCCACCACATCTCCATT
TAACTCTCCTATCTGGCCAGTGCAGAAAACAGATGGATCATGGAGAATGA
CAGTTGATTATGGATAATTAATTCGGGTAGTAACTCCAATTGCAGCTGCT
GTACCTTATTTTTTTTCCCCCCCCCCCCCATTAACACATCTCCTGGCACC
TGGTATGCGGCTATTGATAAAAAAAATGACTTCTTCTCAGGAGCTGTCCA
TAATGACCACCAGAAGCAATTTGCTTTCAGTTGTCAAGGCCAACAGTATA
CCTTCACAGATTTGCCTCAAGGATATATTAACTCTCCTGCCCTGTGTCTT
AATTCACCTAATAAGAATCTTGATCGTTTGGATTTTATACTAAACATAGC
ATCGGTGCGCTATCTGGATTATTTGTATTCTGACGGGAACATAATCATTC
CGGTATTTATTCAAACACTTTGACTCTTCTACGTTTCTGTTTAGGTTCTT
GGTAGTTCGATACTCATAAAATTCATTCTCAC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTCCTCAATAAGACCAATGAGTA
AGTAATCTTAACAGCAGAGCCATCTCTCCTGCCCTGGGAAACACGGTTTC
AGTTTCAGATTAGAGGAAATGGGTTTGCTGAGGGGGAAACCCAAGAGAGA
TTGAGAACAGTTCCAGTGAAAAGTTGGTGTCTGCCTGTGCTGCCAGGAGG
GTCATCAAATGCTCAAATGAACAGCTTTTAAACATGCATGATGACACAGA
CACTGAAACTATTATCTTCTGCACTCACTCACGCAAACATCCCTGCTATA
ACAAGCTTCTTTATCTTGCCCCACCTCTCATTCTTTCAAAAACTAACAAA
CTTGAAGAAGGCAGAGAGTAAAGGAGGTTGTGATTCAAAAATAAAGTGTG
GAAACCAGTGCACTAAAAGAAGGCTAGAATTTATTCTTGATTAACCAGAA
AAGGAACATTTACAATTGTTGGCATTGTTATAAGAACAGAATGTTCTACT
TGGTGATATTAGGATTACTCAATAGATTATAGGATGTTCATTTACATGTG
ACTCTCAGGGGGGCATCCACTGGAGCATAACCCAGTTAAAAATGCCAGGA
CATACTCTCACACACTCTCTTTCATCTTTATTTACTATTCCTTTTATATT
AGTTATAAGTTCTTAGGAATAAAAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_l10.g1 MSMg01no191_l10.g1 CHROMAT_FILE:
MSMg01no191_l10.g1 PHD_FILE: MSMg01no191_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:26 2005
         (283 letters)



>mm_chr18_88959422_88960104
          Length = 683

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcctcaataagaccaatgagtaagtaatcttaacagcagagccatctctcctgccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 agtcctcaataagaccaatgagtaagtaatcttaacagcagagccatctctcctgccctg 424

                                                                       
Query: 61  ggaaacacggtttcagtttcagattagaggaaatgggtttgctgagggggaaacccaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ggaaacacggtttcagtttcagattagaggaaatgggtttgctgagggggaaacccaaga 364

                                                                       
Query: 121 gagattgagaacagttccagtgaaaagttggtgtctgcctgtgctgccaggagggtcatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gagattgagaacagttccagtgaaaagttggtgtctgcctgtgctgccaggagggtcatc 304

                                                                       
Query: 181 aaatgctcaaatgaacagcttttaaacatgcatgatgacacagacactgaaactattatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aaatgctcaaatgaacagcttttaaacatgcatgatgacacagacactgaaactattatc 244

                                                      
Query: 241 ttctgcactcactcacgcaaacatccctgctataacaagcttc 283
           |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 243 ttctgcactcactcacacaaacatccctgctataacaagcttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)