BAC Information

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BAC

Clone NameMSMg01-194A06
Chromosome18 (Build37)
Map Location 21,144,567 - 21,144,816
singlet/doubletsinglet
Overlap genenone
Upstream geneDsc3, Dsc2, Dsc1, Dsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125
Downstream geneRnf138, Mep1b, EG622978, Gm944, LOC665722, LOC225264, Klhl14, 4921528I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194A06.T7 (MSMg01no194_a06.b1)MSMg01-194A06.TJ (MSMg01no194_a06.g1)
ACCAG383092AG383093
length724772
length of high quality
(start - end)		579 (45 - 623)247 (78 - 324)
definitionCHROMAT_FILE: MSMg01no194_a06.b1 PHD_FILE: MSMg01no194_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:46 2005CHROMAT_FILE: MSMg01no194_a06.g1 PHD_FILE: MSMg01no194_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:46 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGTTCAGCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTC
TGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTA
TCTGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTATTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAACTTTATGA
GGTCCCATTTATCGATTCTCGATCTTACAGCACAAGCCATTGCTGTCTCT
TGTGAGACTGTGCCGGGGCCTAGCAAACACAGAACTGAATGCTCACAGTC
AGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTAC
CCAAGGAGCTAAAGGAATCTACAACCCTATAGGTGGAACAACATTATGAA
CTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGA
TGGCCTAGTTGGCCATCACTGCAAAGAGAGGCCCATTGGACTTGCAAACT
TTATATGCCCCAGTACAGGGGAACGCTAGGGCCAAAAAGTGGGAGTGGGC
GGGTAGGGGAGTAGGGGGGAGTTTCCTCCTTTGCTTTTTCTTTTCTTTCT
CTCCCTTTTTTTTCTCTTTTTCTTTTCTTTTTTTTCCTCCTCTCTTTCTT
CTTTATCTTTCTTTTTCCCTTTTT

CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGACAAGAGCATGCCACAGTGCA
TGTGCAGATCTGAAAGGACAAACTTTATGGTTTAGTTAGGGGCGGGGGGG
GGGGTCAGACAGACTTAGGTGCCAGCCTTACTCAAAGGGTATTTTTACCT
ACTGAGCCATTCCATTTATCCAGAATATGTTTGTTTGTTTTTTGTTGTTT
TTTTGGTTTTGGTTTTTTAGCCTCGCCAGTGTTTATTTTCTGTGTACTGG
TGTTTTGCCTGCTTATGTCTTGTGTGATTTGTGTCAGATTCCCTGGAACT
GGAGTTACTGGCAGGTGTGACTGCCCATGTGGGTGCTGCAAATTGAACCC
GGCTTCTCTGGACCAGTAGCCCCCACTCTTATGTGTTGAGCCATTGCTTC
AGCCCCCAGAAGGTTACTAAAATTACTCTTGACTTTCCAATTGCTTTACG
TTCCCCTATTTTGACCGACCGGCTTCCACTTTTTCATTTACCCTCAATTG
CACCCGTTTCTTTTGGCCTTTGATGGTTTGCCTCTTTCCACCTCTATATG
TCGTTTTTTTGTATCGTTTTTCTTTCGCCGTGCGTTTGATTATATTCGCC
CATTCCTCCTTTCTTATTTAACACCCCTTCTTCTCTTATCCTCTTTACTT
CCCCCTCCTATCTCCCCCTTCTTCGTGACCTATGTCCTTTGCTCCACACC
CCATCCCCGTCTTCCATGCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_a06.g1 MSMg01no194_a06.g1 CHROMAT_FILE:
MSMg01no194_a06.g1 PHD_FILE: MSMg01no194_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:46 2005
         (247 letters)



>mm_chr18_21144367_21145016
          Length = 650

 Score =  387 bits (200), Expect = e-112
 Identities = 237/250 (94%), Gaps = 3/250 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacaagagcatgccacagtgcatgtgcagatctgaaaggacaaactttatggtttagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 450 agacaagagcatgccacagtgcatgtgcagatctgaaaggacaaactttatggttcagtt 391

                                                                       
Query: 61  aggggcggggg--gggggg-tcagacagacttaggtgccagccttactcaaagggtattt 117
            |||| |||||  |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cgggggggggggaggggggttcagacagacttaggtgccagccttactcaaagggtattt 331

                                                                       
Query: 118 ttacctactgagccattccatttatccagaatatgtttgtttgttttttgttgttttttt 177
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttatctactgagccattccatttatccagaatatgtttgtttgttttttgttgttttttt 271

                                                                       
Query: 178 ggttttggttttttagcctcgccagtgtttattttctgtgtactggtgttttgcctgctt 237
           |||||||||||||| | || | |||||||||||||||||||||||||||||||||||| |
Sbjct: 270 ggttttggttttttggtcttgtcagtgtttattttctgtgtactggtgttttgcctgcgt 211

                     
Query: 238 atgtcttgtg 247
            |||||||||
Sbjct: 210 gtgtcttgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 650
Length adjustment: 9
Effective length of query: 238
Effective length of database: 641
Effective search space:   152558
Effective search space used:   152558
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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