Query= MSMg01no196_i12.b1 MSMg01no196_i12.b1 CHROMAT_FILE:
MSMg01no196_i12.b1 PHD_FILE: MSMg01no196_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:06 2005
(213 letters)
>mm_chr18_57346876_57347488
Length = 613
Score = 279 bits (144), Expect = 1e-79
Identities = 179/194 (92%), Gaps = 6/194 (3%)
Strand = Plus / Minus
Query: 5 gaattcagctgaggccaagggagacctggttgacaggttgagcttggtaacctcacaaac 64
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 342 gaattcagctgaggcaaagggagacctggttgacaggttgggcttggtaacctcacaaac 283
Query: 65 agtagatctcaacctggtcttggtgattgttttatacttatttgtcaatgggaggtatat 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 agtagatctcaaactggtcttggtgattgttttatacttatttgtcaatgggaggtatat 223
Query: 125 gagataatcctactatttgcgtgcgtgcgcgcgcgcgcgcacacgcacacgcacacgcac 184
||||||||||||||||||||| |||||| |||||||||| ||||| ||||| |||
Sbjct: 222 gagataatcctactatttgcg------cgcgcgtgcgcgcacacacacacacacacacac 169
Query: 185 acgcacacgcacac 198
|| ||||| |||||
Sbjct: 168 acacacacacacac 155
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space: 123216
Effective search space used: 123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no196_i12.g1 MSMg01no196_i12.g1 CHROMAT_FILE:
MSMg01no196_i12.g1 PHD_FILE: MSMg01no196_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:06 2005
(536 letters)
>mm_chr18_57300788_57301723
Length = 936
Score = 1002 bits (518), Expect = 0.0
Identities = 530/534 (99%), Gaps = 2/534 (0%)
Strand = Plus / Plus
Query: 1 ttgtttggggttacagtgccccattcaaatagcacatttcatttctttcttttgattttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtttggggttacagtgccccattcaaatagcacatttcatttctttcttttgattttt 260
Query: 61 aattttagtggtggccggagtaggcatggaaaatagctggtctgtgagaagctgtgcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattttagtggtggccggagtaggcatggaaaatagctggtctgtgagaagctgtgcctt 320
Query: 121 tcctcccgacttggaggaacaatagctgtaatacaacactgctcatgtgacaaacagaga 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctcctgacttggaggaacaatagctgtaatacaacactgctcatgtgacaaacagaga 380
Query: 181 aaggcacccattgtttgggggttggctgatgttccacttggctctcgctggctgt-ccga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 381 aaggcacccattgtttgggggttggctgatgttccacttggctctcgctggctgttcc-a 439
Query: 240 ttgagcttggtagccccaaggaagcagacacacttaaatcaaacagacaaagaaaggagg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttgagcttggtagccccaaggaagcagacacacttaaatcaaacagacaaagaaaggagg 499
Query: 300 tcagggcctttcccattaaactacttgcagaaatgtgtaggaggaaggctttgggcatgc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcagggcctttcccattaaactacttgcagaaatgtgtaggaggaaggctttgggcatgc 559
Query: 360 aatgtaattctggggaagactcattcatgtactgtttgaagctgcagacatacctcaggg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aatgtaattctggggaagactcattcatgtactgtttgaagctgcagacatacctcaggg 619
Query: 420 aaaacatgaagatattggaattccactgtgtctttgaccaataataataataataataac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaaacatgaagatattggaattccactgtgtctttgaccaataataataataataataac 679
Query: 480 tactattattactattttaccattgtctcattgacttatctgaccatagaattt 533
|||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 680 tactattattactattttaccattgtctcattgacttatctgacaatagaattt 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
