Query= MSMg01no199_h04.b1 MSMg01no199_h04.b1 CHROMAT_FILE:
MSMg01no199_h04.b1 PHD_FILE: MSMg01no199_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:00 2005
(686 letters)
>mm_chr18_62664703_62665789
Length = 1087
Score = 1249 bits (646), Expect = 0.0
Identities = 673/682 (98%), Gaps = 1/682 (0%)
Strand = Plus / Plus
Query: 6 ggaattctcatcttgcccacatgttatctcactatgtatctcatgtacatgtagtagagt 65
|||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 206 ggaattctcatcgtgtaaacatgttatctcattatgtatctcatgtacatgtagtagagt 265
Query: 66 cacagcgttgtagccaagcctttttcaggacctgttaaaatattaagggaaactaaacta 125
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cacagtgttgtagccaagcctttttcaggacctgttaaaatattaagggaaactaaacta 325
Query: 126 aaactctgcatcattcttaatttataaacgagacattaactatttaacatagtacagtcg 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaactctgcatcattcttaatttataaacgagacattaactatttaacatagtacagtcg 385
Query: 186 attcaatctagagaacacaagtcaaatcaggtcataattactctcttcatcatcttcaaa 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 attcaatctagagaacacaagtcaaatcaggtcataattactctcttcatcatcttcaaa 445
Query: 246 atcatatctggcaaagctgttgggctctgcggtccgcagtgacctcagccaagggaagtc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atcatatctggcaaagctgttgggctctgcggtccgcagtgacctcagccaagggaagtc 505
Query: 306 ggaaatcatggaatacggcgctccatctacaacacctgaaatgagcacaggtgggaaagt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggaaatcatggaatacggcgctccatctacaacacctgaaatgagcacaggtgggaaagt 565
Query: 366 ctcgttagtctggggatgctgactgcggcaaactgtcctcaagcaggtacagctagatac 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctcgttagtctggggatgctgactgcggcaaactgtcctcaagcaggtacagctagatac 625
Query: 426 agagcctgagtcagcggccttcaaagtcatttctaaccgtccctct-catcttcattcac 484
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 626 agagcctgagtcagcggccttcaaagtcatttctaaccgtacctcttcatcttcattcac 685
Query: 485 cttctgtgtgtcaacagatactgagtattctagggatggtaaagacccacagacacacaa 544
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 686 cttctgtgtgtcaacagatactgagtattctagggatggtaaagatccacagacacacaa 745
Query: 545 tatgtatccactctctgcgtcttgcagggatgcaaacctctcattcacccgatgactgct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 tatgtatccactctctgcgtcttgcagggatgcaaacctctcattcacccgatgactgct 805
Query: 605 aagaccctccatcccccattcccccatgccctcccacctagttcacagcttacaatttag 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 aagaccctccatcccccattcccccatgccctcccacctagttcacagcttacaatttag 865
Query: 665 ccctacagtctaggtaaatctt 686
||||||||||||||||||||||
Sbjct: 866 ccctacagtctaggtaaatctt 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1087
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1077
Effective search space: 728052
Effective search space used: 728052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no199_h04.g1 MSMg01no199_h04.g1 CHROMAT_FILE:
MSMg01no199_h04.g1 PHD_FILE: MSMg01no199_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:00 2005
(305 letters)
>mm_chr18_62753070_62753774
Length = 705
Score = 449 bits (232), Expect = e-130
Identities = 286/306 (93%), Gaps = 4/306 (1%)
Strand = Plus / Minus
Query: 1 catacaacttcctattttaaaaaggtctatgaataggtaaaatgcactatcctatgtgat 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 catacaacttcctatttttaaaaggtctatgaataggtaaaatgcactatcctatgtgat 434
Query: 61 ttctaaaatactatgcacttttaatgcatctggcctttagtctcgggttcctatagactc 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 433 ttctaaaatactatgcacttttaatgcatctggcctttagtctcaggttcctatagactc 374
Query: 121 taagcatcagtagtcttaaataagatagccattggaattgattggttttccttttatcta 180
||||||||||||||||||||| ||||||||| || ||||||||| ||||||||||||||
Sbjct: 373 taagcatcagtagtcttaaatgagatagccactgaaattgattgactttccttttatcta 314
Query: 181 aaatggggggtgcaggctgaaattagtggttcaaaatcccatggatgtggttagcttagg 240
||||| ||| ||||||||||||||||| ||||||||||||| || |||||||| |||||
Sbjct: 313 aaatgagggatgcaggctgaaattagtaattcaaaatcccatcgacgtggttagtttagg 254
Query: 241 tattttgtttggtctgcacagtgtttggaaggatagttattaggtaaatacca----cat 296
|||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 253 tattttgtttagtctgcacagtgtttggaaggatagttattaggcaaataccatttacat 194
Query: 297 ttttaa 302
||||||
Sbjct: 193 ttttaa 188
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space: 206016
Effective search space used: 206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
