BAC Information

Click to search

BAC

Clone NameMSMg01-201G14
Chromosome18 (Build37)
Map Location 72,199,023 - 72,247,337
singlet/doubletdoublet
Overlap geneDcc
Upstream genenone
Downstream geneLOC629684, LOC100043411
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201G14.T7 (MSMg01no201_g14.b1)MSMg01-201G14.TJ (MSMg01no201_g14.g1)
ACCAG386987AG386988
length1,2911,214
length of high quality
(start - end)		467 (149 - 615)340 (89 - 428)
definitionCHROMAT_FILE: MSMg01no201_g14.b1 PHD_FILE: MSMg01no201_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:34 2005CHROMAT_FILE: MSMg01no201_g14.g1 PHD_FILE: MSMg01no201_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,199,023 - 72,199,489)(72,246,999 - 72,247,337)
sequence
CTTTTTTNNNNNNAGCAATGGGCGCTAAGACTCCTATGGGAGAGGATCCG
CGGAATTCCGGTGCTCTAACGACCCTTATGTGAACATCTTCGGAAAGGCT
GCATGACTGAATTCCGTCCAGTGCGCTGGAAGTGTGCGCACCGCGCAGAG
GTGGCACTCGCTGAGCGTCATTTGTTTCCTGGCTATGTGAGTTCTTATTA
GGATGAATTTTTAGATTAAAATTTTAAATAGCTTAAGTCAGTGAAGCATT
GCACAAACACAAATATAAATGGGGCATTGGAGAATACAAACGAGCCTTCT
CAACACTGGGTTAAGAGATTGGCTTCAGAACCCCTGGATGCAATATGGTA
TAGTCCTGCACCAGACAGGGTCCTAGCTAGATTCCTGTGAGCACTCACAT
GACTGGTTCATTTTTTCCCTTTATACAAGGCCCCGGGAGATAAGATTGTG
ATACTGTGGCTCATAATGTTCTACAAAGGTGAGTGGGTTATTTTTTAAAC
CCCAAATGAGGGTCGATTACTCTGTAGTGCTGTGAAGATTATAACTACCC
AGTGCTATCCTAACATGTCACTGAATCGCATCTGTTTCTGCTATACTTCT
TTATTTATTATTCTGGTGCCGGAGAAGCTGTTTTTCTTCCTTTTTTTTCT
CTTTTCTATTTTTCTCTTTTTTTCTTTTTTGTCCTTTCTTTCCTTTTTTC
GTATTTCTTTTTTTTTTTTTCTTCTATTCTTCTTTTTTTTTTTTTTTTTT
TTTTTCTTCATCTTGTTTTTCTTCTCTTTCTTATTTTTTTTTTTTTTTTC
TTTTTTTCTTTCTTTTCTTTTCTTTTTTTTTTCTTTTTTTTTTCTTCTCT
TTCTTCTTTTTTTTCTTTTCTTTTTTTTTTTTCTTTTTATCTATTCATCT
TTCTTTTCCTTTTTTTTTTTTCTTTTTCTTTTTTTTTTTTTTCTCTTTTT
TCTTTTCTTTTTTTCTTTTTTTCCTCTTTTATTACTTTTTTTTTTCTTCC
TCCTCTTCTCTTTTTTTTTTTTCTTATTTTTTTATCTTTTTCTTTGTTTT
TTTTTTTTTTTCTTCTTTTCTTATTTTCCTTTTTTTTCTCATATTCTCTC
TTTTCTTCCTTTTATTTCATTCTTTTCTATCCTGTACTTTCTACTTTTCC
TTTTTTTTTTTTATTCTCTCTTTCATCCTACTTCTTTTTTTTTCTTTCCC
TCTTGTTCTTTCTTTTTATTCTCTTATTCTTTTTCTTTCTTTTTCCTTTT
TATTCCATTCTATTCTTTATCCTCTTTTTTATTCTTCTTCT

CCTTTTTTTTNNNTGGATAGGATGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTAGATGTTGTAGCAAGGCTC
AGATTCCCCAGCAAATGCTTCAAGTACTTCTCATACTGAGAGTCCGCGTG
ACATATTTCAATAAGACATGAATTCAGACACATACACACACACAGATTGA
GAAATATTACTTGCAAGTGTAAATAAATATAAAGATATGTTGCTTTTCCA
TTCCTGACAGAGAGGAATATTTGATTCATATGTTTAATATGCTTTGCCTT
TTACAGGGGAAGAAACTAAGGGAATGTTACTCCTCACACCAAGAAAAATT
TTAAACAAGTTTCTTATAGATAGGAACTAAGGTCTGAGGGTGAAAGGCTG
ACAGGGATGGTGTGTTAGGAATTATTCNAGGAAGATGAATAGATGAGTTT
ACCCTCCCTCGCCTTTATACCCCAGACAAATTGTTTCTCCTTATACGCCT
ATTTTTATAATTTAATGCTTTGATTTTAATTTTTTCTTACACTTCAGGTT
TCTCTTTTTCGTGAAATGTATTTCAAATCCCTATTTTCTTTTTTTTTCTT
ATTCTTTTCATTATTTCTCCCTTCATATATCTATTTCCCTAATAAATTTT
TTCTTAATATTTTATAATTTATTATTCTTTTTTTTCTCACTTTTTTATCA
TCTTTTTTCCCTTTTTTTTTCCTTTTTTCTCTCCTTTCTTTTCTTCCCCT
TCTCCCTCCCTTAATTTTCATTCTTTTATATTTTTTTTTTTTTTATTTTT
TTTTTTCTTTTTTTCTCCTCCTTTTTCTTATTTTTTTCTTTATTCTCCCC
TTCATCTTTATCTTTTTTTTTTTATCCTTCTTTTCTTCTCTATTCCCTTT
TTTTATTTTTCTTTCTTACTTTCCTTTCTCTTTTTTTTTCTTCTTATTCT
TCTTCTTCCTATTTTCTTTTTATTTTCATTTTTTTTCTTTCCTTTTCTTC
CTCTTCATTCTTTCATTTTCTTTATTTTTCTATTCTTTTTTCTTTCTCTC
TCTTTTTTTTTTTCCTTTTCTTTTCTTATATCTTTCTCTCTCTTCTATTT
CTTCTTTTCTTCTTTATTTCTTTTTTATCTCTTTTTTTATTCTATTTTTA
TTTTCTTTTTTCATCTCTTCTTTTTTACTCTTCTTTTTTATACTTATTTT
TTCCTGTCTTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_g14.b1 MSMg01no201_g14.b1 CHROMAT_FILE:
MSMg01no201_g14.b1 PHD_FILE: MSMg01no201_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:34 2005
         (467 letters)



>mm_chr18_72198823_72199689
          Length = 867

 Score =  872 bits (451), Expect = 0.0
 Identities = 463/467 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtggcactcgctgagcgtcatttgtttcctggctatgtgagttcttattaggatgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtggcactcgctgagcgtcatttgtttcctggctatgtgagttcttattaggatgaat 260

                                                                       
Query: 61  ttttagattaaaattttaaatagcttaagtcagtgaagcattgcacaaacacaaatataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttagattaaaattttaaatagcttaagtcagtgaagcattgcacaaacacaaatataa 320

                                                                       
Query: 121 atggggcattggagaatacaaacgagccttctcaacactgggttaagagattggcttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atggggcattggagaatacaaacgagccttctcaacactgggttaagagattggcttcag 380

                                                                       
Query: 181 aacccctggatgcaatatggtatagtcctgcaccagacagggtcctagctagattcctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacccctggatgcaatatggtatagtcctgcaccagacagggtcctagctagattcctgt 440

                                                                       
Query: 241 gagcactcacatgactggttcattttttccctttatacaaggccccgggagataagattg 300
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagcactcacatgactgggccattttttccctttatacaaggccccgggagataagattg 500

                                                                       
Query: 301 tgatactgtggctcataatgttctacaaaggtgagtgggttattttttaaaccccaaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatactgtggctcataatgttctacaaaggtgagtgggttattttttaaaccccaaatg 560

                                                                       
Query: 361 agggtcgattactctgtagtgctgtgaagattataactacccagtgctatcctaacatgt 420
           ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 agggtcgattaatctgtagtgctgtgaagattaaaactacccagtgctatcctaacatgt 620

                                                          
Query: 421 cactgaatcgcatctgtttctgctatacttctttatttattattctg 467
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cactgaatcgcatctgtttctgctatacttctttatttattattctg 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no201_g14.g1 MSMg01no201_g14.g1 CHROMAT_FILE:
MSMg01no201_g14.g1 PHD_FILE: MSMg01no201_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:34 2005
         (340 letters)



>mm_chr18_72246799_72247538
          Length = 740

 Score =  586 bits (303), Expect = e-172
 Identities = 330/339 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtagcaaggctcagattccccagcaaatgcttcaagtacttctcatactgagagtccgcg 60
           |||||||||| |||||||||||||||||| ||||||||||||||| |||||||||| | |
Sbjct: 539 gtagcaaggcgcagattccccagcaaatgtttcaagtacttctcagactgagagtcagtg 480

                                                                       
Query: 61  tgacatatttcaataagacatgaattcagacacatacacacacacagattgagaaatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 tgacatatttcaataagacatgaattcagacacatacacacacacagattgagaaatatt 420

                                                                       
Query: 121 acttgcaagtgtaaataaatataaagatatgttgcttttccattcctgacagagaggaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 acttgcaagtgtaaataaatataaagatatgttgcttttccattcctgacagagaggaat 360

                                                                       
Query: 181 atttgattcatatgtttaatatgctttgccttttacaggggaagaaactaagggaatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 atttgattcatatgtttaatatgctttgccttttacaggggaagaaactaagggaatgtt 300

                                                                       
Query: 241 actcctcacaccaagaaaaattttaaacaagtttcttatagataggaactaaggtctgag 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 299 actcctcacaccaagaaaaattttaaacaagtttcttataaataggaactaagatctgag 240

                                                  
Query: 301 ggtgaaaggctgacagggatggtgtgttaggaattattc 339
           |||||||||||||||||||||| | ||||||||||||||
Sbjct: 239 ggtgaaaggctgacagggatggggggttaggaattattc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |