BAC Information

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BAC

Clone NameMSMg01-201H08
Chromosome18 (Build37)
Map Location 41,141,845 - 41,142,072
singlet/doubletsinglet
Overlap genenone
Upstream geneYipf5, Kctd16, EG225416
Downstream geneLOC677182, LOC100041988, LOC100041997, Prelid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201H08.T7 (MSMg01no201_h08.b1)MSMg01-201H08.TJ (MSMg01no201_h08.g1)
ACCAG387018AG387019
length713730
length of high quality
(start - end)
230 (83 - 312)278 (77 - 354)
definitionCHROMAT_FILE: MSMg01no201_h08.b1 PHD_FILE: MSMg01no201_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:39 2005CHROMAT_FILE: MSMg01no201_h08.g1 PHD_FILE: MSMg01no201_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTGXXXXXXXXXXXXXXXXXXXXXXXXXXATTCGGACGCGAGACCGCGG
AANTCNNATTAGCTATAGACCTCGGAAAAAGNACTCCAAGAAGAAACTGC
TTTGTTGTTTTATTCTTCACTGCAACATTAATTCAAGAAAATTCTGAGAG
TTGAGGAATCACTAGGGAGAGTCACAGGAAACCCAACATGGCCTGATCCA
CTTGGGAAGGCTGCATAAACACCTAGTGGTCAGAGGACATTTACACACTT
TCTAGCACTTCAGTGGTGCCACAGCTGCAAGGCAGGGCAGTTGCCTAGGG
GAGAAGGATGTCTTTATTGTTTCAGGAAGGNTCCTTCTCATCCCAACACT
CATTTTTTTTTTCCCCCCCCACCCATCCAATCAGGAAGAACAGCTTCATG
CTGAAGCATGACCAATCAAAAAAAAGAATAGTAGAGAGAGGCGAAAAGGC
CGAATGCTAATTACGCTTCCAGCAACCTGCTCATTTGTCTTCACCCAAAG
AAATTACAGACATTGTTTTTCTCTTGACAAAATCCTGTCACCTAAATAAA
TCATAGATGAGCATGATGCAACCCTTTTATTTTTATCTCACATTGGAAAG
ATTTGGGTCCTACTGTGAATCAATATTACTAAAGTAAGTCCGCGAATAGA
TTTTTTTTTATTAAGAGTGCCATTTGAGGAAATCAAAACTCTTGCGTTTC
ATAATATATTTTA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCTATCTCTTCCCATACCTGA
TCCTGCCCCCCCTTTTCTTCCCTCCCCTTCCTTTCTCCCTCCCAAGTTCC
TCCCTCCCTCTAGCTCCTCTGATTATTTTGTTCCCACTTCTATGTAGGAT
TGAAGCATCCAAACTCTGGGCTTCGTTTTTCTTAAGCTCTATATTGTTTG
TGGGCTGTATCTTGGGTATTCTGAGCTTCTCGGATAATATTCACTTATCA
ATGAGTAAATACCATTTATGTTCTTTTGTGACTGGGTTACCTCATTCAGG
ATGATAGTTCATTCCCCGACGTCCCCCCGAGGAATTCATGGCATGTAAGG
AANTATTTTTCCCCAAAAAAAAACAAAAAATCTCTGAGGGGAGGGGGTGA
ATACTTATAATAGAAAATGGTTTGGTGTTAGGAATGGGAGATTTTGTCTT
GTGCATAGTCCCTTTATTATATTCATGAATGCCTGGCATAATAAACTAGT
GGGTATTCTTTTTTTTTTATTCCTTTCCTTTTGTTGACTACTTACCACAG
GCTTTTATTTTTGCGTCTCCTTTTCTTTATTTTTCCACTTAGATTTTTTT
AGTTTTCACCAACATGCAGAGACACCCCTTCCCGCCACAGTAAATCATTA
ATTAAAATGTTCCGGGACACCTGTTGGCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_h08.b1 MSMg01no201_h08.b1 CHROMAT_FILE:
MSMg01no201_h08.b1 PHD_FILE: MSMg01no201_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:39 2005
         (230 letters)



>mm_chr18_41141645_41142274
          Length = 630

 Score =  402 bits (208), Expect = e-117
 Identities = 223/228 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   actccaagaagaaactgctttgttgttttattcttcactgcaacattaattcaagaaaat 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 428 actccaagaagaaactgctttgttgttttattcttcaatgcaacattaattcaagaaaat 369

                                                                       
Query: 61  tctgagagttgaggaatcactagggagagtcacaggaaacccaacatggcctgatccact 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tctgagagttgagcaatcactagggagagtcacaggaaacccaacatggcctgatccact 309

                                                                       
Query: 121 tgggaaggctgcataaacacctagtggtcagaggacatttacacactttctagcacttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 308 tgggaaggctgcataaacacctagtggtcagaggacatttacacacacactagcacttca 249

                                                           
Query: 181 gtggtgccacagctgcaaggcagggcagttgcctaggggagaaggatg 228
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gtggtgccacagctgcaaggcagggcagttgcctaggggagaaggatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)