TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTGGCAGGAAGCACAAATCAAGAAAAACATCGTGGAGGACTTCCT
TTCTGGGAACTAGCAGGTGTGGACCACACACGTGATGCCCTTTTTCAGCC
CTCCACGTGGCAGGAGGCAGGACATCTTCCTCATTATTGTCTACCTTTAT
TTCTAAACGTTAATTACCTGAACTTCCAGATGCCTCCTCCCTCTGGGGAA
GTGATAATTGTGCTGAGTGGCGGCTGAGGCCACAGAGGTCTCAGGAGAAC
TTCAGATCATTGTTACCTTATCACCTAGGTAGGATGGAGGTGCCACCCAG
GATGTTTTGTGAACTGCACCCCCCCCCCCNNTGTTTACTNGTTTTTTTGT
GTTTGCTTCTTCTCCCCCACAAAAAAAAAAATTGCTGTGGGGGGGTGGTG
TTTTTCCCACCCCTATCCACCATGTTTACTTGCCTTTCTACCTTTTTTTT
TTCATTTGCCACCTATCCGTTGCCTCCCAATTTTTTGCTTTTCTTTTTTC
CCTTCACCTTTTTTTTTCCCCCCTTTTTTTTTTTTTCCCTTTTTCCCCTT
TTTTCTTCTCTTTTATCCATATTCTATGCCCCACACAACTTTTTTATTTT
ACCCCTTATTTTTGTCCCTTACACCTTCATAAACTAGCACCACCATCATT
TGTTTCTATACTCTGATTGATATTAATATTTAATN

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTACACGCGAAATTCCTTCAACTTTCACCCTGTGGCTGGCTG
TGACGTCTGCATTTGCCCCCGGAAGGGCACCATTGAGGCGGCCGTCTCTG
AGTGTGACAGGGACAGCGGGCAGTGCAGGTGAGCTATGATGCACGAGTGT
GCCTGGTCCTGTCATGGGACGATCAGGTGCCATCTGCACGTAGGAGTCCT
TGTCATTCTTCTCTTCCTACCTGTGCACTGTGCTGGCTTTGGGACAGAGC
TTCCCAGCAAGATTTTTTTTTTGCTGGGCAGGTTGGTTGGTCCATGCCGA
CTCTTTTTTTTCAGCCCCCCACCGCCTTGCCCATGTATGCCAGCATGTTG
TCACAACAGGATTGCGCTGTGTGAACACCATGCCTCAATGTCTTGATGGT
TGGTTTTGAGAGTCATCTGGAAAGGGTCTCTCAGCATAATTTATACAATC
CCTCTTGACTCCCTTCCCAGGTGATTCTAGACTAGGTCAAGTGGACAAAA
ACTAACCATCACAGGCCTCCAAAGCAGGATTTGTTGGGAGTAGGGAACCA
GGTAGACGCTGCCATCCTTCCGAACTAACCCTTATGTTCCCCATTTTTTT
TTTTTTTCAACGATGTCTGATCTACCCATCTCGAACAAATGTCCTGCAAA
ATA

Query= MSMg01no202_g20.b1 MSMg01no202_g20.b1 CHROMAT_FILE:
MSMg01no202_g20.b1 PHD_FILE: MSMg01no202_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:14 2005
         (310 letters)



>mm_chr18_12653695_12654404
          Length = 710

 Score =  561 bits (290), Expect = e-164
 Identities = 302/306 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttggcaggaagcacaaatcaagaaaaacatcgtggaggacttcctttctggga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 510 gaattccttggcaggaagcacaaatcaagaaaaacatcgtggaggactttctttctggga 451

                                                                       
Query: 65  actagcaggtgtggaccacacacgtgatgccctttttcagccctccacgtggcaggaggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 actagcaggtgtggaccacacacgtgatgccctttttcagccctccacgtggcaggaggc 391

                                                                       
Query: 125 aggacatcttcctcattattgtctacctttatttctaaacgttaattacctgaacttcca 184
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 390 aggacatcttcctcattattgcctaactttatttctaaacgttaattacctgaacttcca 331

                                                                       
Query: 185 gatgcctcctccctctggggaagtgataattgtgctgagtggcggctgaggccacagagg 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 330 gatgcctcctccctctggggaagtgataattgtgctgagtggctgctgaggccacagagg 271

                                                                       
Query: 245 tctcaggagaacttcagatcattgttaccttatcacctaggtaggatggaggtgccaccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tctcaggagaacttcagatcattgttaccttatcacctaggtaggatggaggtgccaccc 211

                 
Query: 305 aggatg 310
           ||||||
Sbjct: 210 aggatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no202_g20.g1 MSMg01no202_g20.g1 CHROMAT_FILE:
MSMg01no202_g20.g1 PHD_FILE: MSMg01no202_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:14 2005
         (189 letters)



>mm_chr18_12640400_12640988
          Length = 589

 Score =  335 bits (173), Expect = 1e-96
 Identities = 185/189 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagggcaccattgaggcggccgtctctgagtgtgacagggacagcgggcagtgcaggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagggcaccattgaggcggccgtctctgagtgtgacagggacagcgggcagtgcaggtg 260

                                                                       
Query: 61  agctatgatgcacgagtgtgcctggtcctgtcatgggacgatcaggtgccatctgcacgt 120
           |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 261 agctatgatgcacgagtgtgccaggtcctgtcatggaacgatcaggtgccatctgcacgt 320

                                                                       
Query: 121 aggagtccttgtcattcttctcttcctacctgtgcactgtgctggctttgggacagagct 180
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 321 aggagtccttgtcattcttctcttcctacctgtgcactgtgctggcttcgggacggagct 380

                    
Query: 181 tcccagcaa 189
           |||||||||
Sbjct: 381 tcccagcaa 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)