BAC Information

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BAC

Clone NameMSMg01-203B16
Chromosome18 (Build37)
Map Location 85,142,689 - 85,142,872
singlet/doubletsinglet
Overlap geneFbxo15
Upstream geneTshz1, Zadh2, LOC669856, Zfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, 1700034H14Rik
Downstream geneLOC100039765, LOC665382, LOC545269
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203B16.T7 (MSMg01no203_b16.b1)MSMg01-203B16.TJ (MSMg01no203_b16.g1)
ACCAG387999AG388000
length778734
length of high quality
(start - end)
180 (120 - 299)234 (132 - 365)
definitionCHROMAT_FILE: MSMg01no203_b16.b1 PHD_FILE: MSMg01no203_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:09 2005CHROMAT_FILE: MSMg01no203_b16.g1 PHD_FILE: MSMg01no203_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTTCGCACCTGCGCGGAATTCTTTAA
ACCCTATCAGTAGCAAGGAAATTTGTTTCAATATGATATTTTATATAGTA
AGATTTTGTTTTTCACCTATGGTAACAGGATGTCTTATGTAAAACAATTT
ATAGACTCTAAGTATAAAATTTGTAACTTTCTCCGGGTGTGAGTTTCCTT
GCTGTTGATCTCCAGTATGCTGGACTTAGAGCTTCCCTTGCCTTGGATTG
CACTCTTTTTTTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGN
ACACTGGACCTTGTCCCTCAATTTGNNACAGAAGACAGAGAGACAACAAG
TTTTTTTTTTTTCTCCCCCCCCCCCCANGAGATCGAAAAAATGAGGGCTG
GGGGCTGCCCCCCCCCCACAAAAAAAAAAAGATTNTGTCCGTCTTCGCAT
AAATAGTTTATACTTAAATATTTTTTATTTATAACGTATCCTCTATCACC
ATATTTCCCCCATTTAATTCATCTTTTTATAGTCCTTAATATACCTTCCC
TCTCTTTTTCTCTATTTATATTTCTCTTTCTATCTCATCATATCTATTTC
ACACCTTTATTTTTATTATCCATATCTATTCTAGTTACAACTTGTATCTT
ATATTTTTTATCACAGTATCTCCCCACCCTCAACTATATCTTTCTTTTTT
TTTTTCCCATCTTTTTCAAATTCTTTTTTCTATCCATTTTCTATTCTATT
GCATTATTTTTAGTTTATTACTCACGTN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACAAAAACCATCCAAGACCTAAA
AAAGGAATTAGAAACAATAAAGATTACCCCCAGGGAGACAACTCTGAAGG
TAGAAATCCTAGGAAAGAAATCAGGACCATAGATGTGAGCATCAGCAACA
GAATACAAGAGATGGAAGAGATAATCTCAGGTACAGAAGATTCCATAGGG
AACATGGACACAACAATCAAAGAGAATGCAAAATGCAAAAAGATCCTAAC
TCAAAACATTAAAGAAATCCAGGAAACAATGATATGACCAAATCTACAAA
TAATAGGAGTAGATGATTANAATGACCTTNNNCCCCNNCCCCTCATTTTT
TCTCCTTTTTTTATTAGGTGTCCCCCCCCCAAAAATTACNAAAAAAATGT
GGGGGGGTGGCGATACCCTCCCCCTGCCCTGTTCCCCTACCTCCCTCCCG
AATCCCACTTCTTGTCCCTGGCATTCCCGTGTACTGGGTTATAAACGTTT
GAATTCCATGTGTTTCTTTTTCTATGCGTTGAATGATTACTCATCTCCTG
CTTTCTATCACTTTATTTTATCATCTTGTTTCGTTTGGCCCGTTTGTAAT
CGCGAACTTCAACATGTTTTTATTCCCTAAATAATTGATTACACCCTTCC
TTTCTCGTTGTCTCCCAGTTTTATACGTTTTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_b16.b1 MSMg01no203_b16.b1 CHROMAT_FILE:
MSMg01no203_b16.b1 PHD_FILE: MSMg01no203_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:09 2005
         (180 letters)



>mm_chr18_85142489_85143068
          Length = 580

 Score =  313 bits (162), Expect = 3e-90
 Identities = 177/184 (96%), Gaps = 4/184 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggtaacaggatgtcttatgtaaaacaatttatagactctaagtataaaatttgtaactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtaacaggatgtcttatgtaaaacaatttatagactctaagtataaaatttgtaactt 260

                                                                       
Query: 61  tctccgggtgtgagtttccttgctgttgatctccagtatgctggacttagagcttccctt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 tctccgggtgtgagtttccttgctgttgatctccagtatgctggacttagagcttctctt 320

                                                                       
Query: 121 gccttggattgcactctttttttttttttttt----aaagatttatttatttattatatg 176
           |||||||||  |||||||||||||||||||||    ||||||||||||||||||||||||
Sbjct: 321 gccttggatcacactcttttttttttttttttttttaaagatttatttatttattatatg 380

               
Query: 177 taag 180
           ||||
Sbjct: 381 taag 384


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space:    98384
Effective search space used:    98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)