BAC Information

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BAC

Clone NameMSMg01-203G04
Chromosome18 (Build37)
Map Location 83,911,612 - 83,912,016
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp516, LOC100041001, 4921531P14Rik, LOC665284
Downstream geneTshz1, Zadh2, LOC669856, Zfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203G04.T7 (MSMg01no203_g04.b1)MSMg01-203G04.TJ (MSMg01no203_g04.g1)
ACCAG388173AG388174
length899739
length of high quality
(start - end)
---406 (77 - 482)
definitionCHROMAT_FILE: MSMg01no203_g04.b1 PHD_FILE: MSMg01no203_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:31 2005CHROMAT_FILE: MSMg01no203_g04.g1 PHD_FILE: MSMg01no203_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGATCCGCGG
AATTCACCTTCCTTCCCCCAGAATGGCTAAGGAAACACAGAAAGACAATA
TATCAGTGCTATGCATATCTTTTCTCCGCGATGCCCTNTTTNNTTTNTTT
NTTTTTTTTTTCCCCTTCCTTTTTCCCCTCTTTCCTCTTTTCTCTTTTCC
TTCTTTTCCTTTTTCTCTTTTCCTTTCTCTTCTCCCCTTTTTTCTCTTCT
TCTCCTTTCCTTTCCTCTCTCTTTCCTTCTTCCCTCCTTTTTTCCTTTTT
CCTCTCCTCTCTCTCTTTCCTTTTCCCTTCCCCTTCTTCCCTTTTCTCCC
TTCTTCTTCTTCTTCCCTTCCTCCTCTTCCCCACTTTTTTTTTTTTCCCC
CCCCCCCCACCCATCTCCTATTCCTCTTCCTTCTCTTCCTTTTTTTTTCC
TTGCCTCCTCCCCCCCAAACAAATTTTTTTTTTCCTTCCCCCCTCTTCTT
TTTTCCTTTCCCCCTTTTTCCCTTTCTCTTTCCCCCTCCCCCTCCTCTCT
CTTTTTCTTTTTCCTCCCCCCCCTTTTCCCCCTTCTTTCCCCCCTTTTTT
CCTTCCTTTTTCCCCCTCCCTTCTCTCCCCTTTCTTTTCCTCCTTTCTTT
CCCCCCTTTTCCTTCTCCCCTCTTTCCTTTTTTCCCCTCCTCCTTCCTTT
CTTCTCTCCCATCTCCTCCCTTTTCTTTTTTTTTTTTATCTCCTCCTCTT
TTCCTTTCCTCCCTTCTTCTTCTCTCTCTTCCTCTCCGCTCTCTTCCCAC
TTTTTCTTCCCACTCCCTTCTCCTTTTTCTTTTTCCACTCTTTTTTCCTT
TTTTTTTTCTCCCCCTCCCTTCTCTCCATTCTTTTTTCTCTCTCCTTAT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGGAAGGCAAAACAGGAGCAAT
TCACATGTCCCTCATCCTCTGCAGACATCCCTGCTCCTCCCATACCACAA
GCCTGGCTCTGCCCTCCAAGAAAACTCAACAGCGGTCTGACTTCCTCCAC
TGATCATGTTCCTCCCTTCTGAGAACTTTCTTCACCTGGCAGTGGCTCTT
ATTGATCCTCTCTGGTTAAACAATGACTCTGAGCTGAATCTGCCTCTCAC
TTCAGGATCCCCACCTCAGTGATGAACCAGGTACTTCTGTTACAGGGGAC
AAGCTGGGTCCCAGGAAACCTAACATACTTACATGACATCAGTCCCTAAA
ACGGCTGGTCAGCTCCCCCCCCGCTCCAGTCTGCTCTTCTCCCTTCTTGT
CCCTTTCCAGGCTCAGTGACAACTTCTCCATGTTGTACGCTAGTATGTGC
ACACCAGTGATCTTTTGTTCTCCGTCTGATTACCCTCTATTGCCCACCAA
TGTCTCACAATTAATTCTGTGTCCCAGACTTTGTAGTCCTTGACCTGTGC
CGCCGCGCTCAAATCTCCCACTTGTCATCTGCCCGATCAATTTATATTTA
TAATAATATTTACCCTCCGTACACTGTATTTTCCGTTTCCTTTTCTCGCC
CCAATTGTACCCCTCTACTGCTTCTCCCATCTCCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_g04.g1 MSMg01no203_g04.g1 CHROMAT_FILE:
MSMg01no203_g04.g1 PHD_FILE: MSMg01no203_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:31 2005
         (406 letters)



>mm_chr18_83911412_83912216
          Length = 805

 Score =  677 bits (350), Expect = 0.0
 Identities = 392/406 (96%), Gaps = 1/406 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttggaaggcaaaacaggagcaattcacatgtccctcatcctctgcagacatccctgctc 60
           ||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 201 cttggaaggcaaaacgggagcaattcacatgtccctcgtcctctgcagagatccctgctc 260

                                                                       
Query: 61  ctcccataccacaagcctggctctgccctccaagaaaactcaacagcggtctgacttcct 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ctcccataccacaagcctggctctgccctccaaaaaaactcaacagcggtctgacttcct 320

                                                                       
Query: 121 ccactgatcatgttcctcccttctgagaactttcttcacctggcagtggctcttattgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccactgatcatgttcctcccttctgagaactttcttcacctggcagtggctcttattgat 380

                                                                       
Query: 181 cctctctggttaaacaatgactctgagctgaatctgcctctcacttcaggatccccacct 240
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctctcag-ttaaacaatgactctgagctgaatctgcctctcacttcaggatccccacct 439

                                                                       
Query: 241 cagtgatgaaccaggtacttctgttacaggggacaagctgggtcccaggaaacctaacat 300
           |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cagtgatgaagcaggtacttgtgttacaggggacaagctgggtcccaggaaacctaacat 499

                                                                       
Query: 301 acttacatgacatcagtccctaaaacggctggtcagctccccccccgctccagtctgctc 360
           ||||| |||||||||||||||||||||||||||||||||   ||| ||||||||||||||
Sbjct: 500 acttatatgacatcagtccctaaaacggctggtcagctctgtccctgctccagtctgctc 559

                                                         
Query: 361 ttctcccttcttgtccctttccaggctcagtgacaacttctccatg 406
           ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 560 ttctcccttcttgtccctttccaggttcagtgacaacttctccatg 605


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 805
Length adjustment: 9
Effective length of query: 397
Effective length of database: 796
Effective search space:   316012
Effective search space used:   316012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)