BAC Information

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BAC

Clone NameMSMg01-204E14
Chromosome18 (Build37)
Map Location 55,865,943 - 55,866,295
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545257, LOC100042489, Zfp608, LOC100043089
Downstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204E14.T7 (MSMg01no204_e14.b1)MSMg01-204E14.TJ (MSMg01no204_e14.g1)
ACCAG388730AG388731
length787792
length of high quality
(start - end)
359 (46 - 404)275 (77 - 351)
definitionCHROMAT_FILE: MSMg01no204_e14.b1 PHD_FILE: MSMg01no204_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:46 2005CHROMAT_FILE: MSMg01no204_e14.g1 PHD_FILE: MSMg01no204_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:46 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCAAGATAGCATTATTCAAATATAATCTTTCTTTCTGAAGACTAA
ATATAGAGGATTGTATAGAAAATTATGTGGCTTTTGTAACAAGTTATTTC
GTGTTTTTTCTTAGTCGCACTGTGTCTGTGAAAGCATCTGTCCCCACGTG
TTGGTGATGTGTCTGCGTTTATTAGTCAGCTTGGGTCAGCCGTGATTTGC
AATGTTTACGTTCACAGTAACCATGCCCAGTGCATGTTCCCGAGACGGGA
TCTCTTGCAATGGTTCTCATTTGCTTTCAATCACTAACAGATGCACAGTG
TATGATCATGTCCTTTTAACCTGCCAAAGGGATTAGAGGAATTCTGAACT
CTAATTTTTTTTTCCCCTCTTTTTCANAAGAATTTAGTTCATGATCCTGC
AAATACAAAATTCACAGGTAACACTATTTGATTCCTCATCTTAATGATCT
ACCACATTTCCCATGAATTCATCTTTCTCTTTCAACCTCCCTTACTTCCT
TTCCCTTTATTATTCATCTACTTACCACACCCCATTTACCCGAACTATTG
CCTTATCCACCTCTTCTTCCTTTTCTCTTACCTCCTCTTTTTATTAATAA
ATCCATTTTGTTCACACTTTCATTCCATATTCCCCTCTTTACTCCCTTCC
ACTTCCTCAACCCTCCTATTTACAACTATTATTATATTATGATCCTATAT
ACATTTCTTTCCTTCCTTTCATTTTCATCTTTTATTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAACTGCAGAAACTAGGGAGACT
TTGATTTTTTTTTAAAATTTAATTTGTAATTCTTTTTATACTCCATATTC
CATTCCCCAGCCCCCATCCACCCTCCATCTGCTCCATATCCCACACCTCC
TCCCTACCCCACCCTGTCTCCACATGGTGCCCCCACCCCCTTCCCACCTG
ACCTCTAAACTCCCTGGGGCCTCCAGCCTCTTGAGGGTTAGGTGCATCAT
CTCTGAATGAACACAGACCTGGAAGTCCTCTACTGTATGTGTGTTGGGTG
CTTCAGGTCTATTTTTTTTCCCCCGCCCCCCTGGTGTTCCAGTTGACGAT
ATATTTTGTTTCTCCACCTCCCCCACAAAAAAAAAAAAAAAAAGTAGGGA
GAGGGTTTTTTATTATTATAATATTAAATATACCTTTTACACAATTTCCT
TAACTCTCATACCCGCTTACCCCTCTTGTTCGTCCGCATTATTTACTTCC
CCCAACTCCTTACCTTTCTCTTTTTTTCCACACGTCATATTCTTTACACC
ATCCACTAATACTTTTTTACAATTTTATCCTCTACTCTTATCATCGTTTA
TCCATTTTCTCTCATTTCTCTCCCCTCCCTTAATTAAGGAAAATCGTATC
TCTACTATATCCGCACCTATTTCACTTATTTCATTTACACCCGCTTATCT
CATATAAATATATTTCCTCACATTTCCCCTTGTTTTCTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_e14.b1 MSMg01no204_e14.b1 CHROMAT_FILE:
MSMg01no204_e14.b1 PHD_FILE: MSMg01no204_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:46 2005
         (359 letters)



>mm_chr18_55865739_55866495
          Length = 757

 Score =  613 bits (317), Expect = e-180
 Identities = 345/355 (97%), Gaps = 2/355 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccaagatagcattattcaaatataatctttctttctgaagactaaatatagagg 64
           |||||||||||| |||||||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct: 557 gaattcccaagaaagcattattcaaatatcatctttcattccgaagactaaatatagagg 498

                                                                       
Query: 65  attgtatagaaaattatgtggcttttgtaacaagttatttcgtgttttttcttagtcgca 124
           ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 497 attgtataggaaattatgtggcttttgtaacaagttatttcatgttttttcttagtcgca 438

                                                                       
Query: 125 ctgtgtctgtgaaagcatctgtccccacgtgttggtgatgtgtctgcgtttattagtcag 184
           |  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 437 c--tgtctgtgaaagcatctgtccccacgtgttggtgatgtgtctgcatttattagtcag 380

                                                                       
Query: 185 cttgggtcagccgtgatttgcaatgtttacgttcacagtaaccatgcccagtgcatgttc 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 379 cttgggtcagccgtgatttgcaatgtttacgttcacaataaccatgcccagtgcatgttc 320

                                                                       
Query: 245 ccgagacgggatctcttgcaatggttctcatttgctttcaatcactaacagatgcacagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ccgagacgggatctcttgcaatggttctcatttgctttcaatcactaacagatgcacagt 260

                                                                  
Query: 305 gtatgatcatgtccttttaacctgccaaagggattagaggaattctgaactctaa 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gtatgatcatgtccttttaacctgccaaagggattagaggaattctgaactctaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 757
Length adjustment: 9
Effective length of query: 350
Effective length of database: 748
Effective search space:   261800
Effective search space used:   261800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)