BAC Information

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BAC

Clone NameMSMg01-205L17
Chromosome18 (Build37)
Map Location 40,467,673 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205L17.T7 (MSMg01no205_l17.b1)MSMg01-205L17.TJ (MSMg01no205_l17.g1)
ACCAG389615AG389616
length755818
length of high quality
(start - end)
---257 (77 - 333)
definitionCHROMAT_FILE: MSMg01no205_l17.b1 PHD_FILE: MSMg01no205_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:40 2005CHROMAT_FILE: MSMg01no205_l17.g1 PHD_FILE: MSMg01no205_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:40 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAGGTATTCCCATCACTCAGGGACTTCAGGCGGAAAACTAGCCA
GTCAGCCTCTGGATAGACAAGGCCCAGCAGTTCAGAGAACCAGGCCATCG
CAAATAGTTCACAGACCTGCGAGGAAGACATGCAGATCCCTGCCCCCCAC
CCGCACCCCTCCCTCAGGCCCACCCAAACATAGGGAGAAAAGGCAGTGTG
GCGGAGGGGCAGGACCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATAT
GAATG
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCAGGT
CCACATTTGCTCTGGCTCTGGCCACTGACTGAACCAAACAATTAGGCTCA
TACCTAGAACTTTGGAAATGGTAATGGAGTTGATAACACACCCTAACAGA
AAGAGGAAGGCTCCACTCACTAGTACACTTTCACTAGAAGCCTCGCCCTG
TCAGCAGTTTAGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGGTT
TGGAATTTCTACTTCATGTTTAATTTTTTTTTACTATCCTTTTTTTTTTG
TGATTTTGTTTTTTTCCCCCCCCCCCCCCCCCCGTATGGTATATTTTTTT
TTATTTTTTTTTTTCCCCCCCCTCTTCTAAAAAAAAAAAACTCTTTTGGG
GGGGGGTAATTATTTTTATCTTTTCCTTACCCTCCCTTCCTTTTATTCCT
TCTGTTTTCATATCCCCTCTTCCCCCCCCTTTCTCCCACCACTATCTAAT
CTCCCTCTCATCCTGATTCTCCCCTTATCCATTACTTAACTAAATATTTG
TGCCGCCCCCATAATACCATAAATTATACTCTGCGTCTAATCTTCAATTA
CTTCTTTTCCCTCTCCCCTTCAACCTACTTTCCCTTTTATTTTCACCTAT
TCCTTTTTTCATATTTATTCCCCCCCCTTATTTTTTCTTATTTTATCCCC
CCTCATTACCACCACTTATCTCCCATTCTCTTTTTACATCTCTGCTTCTT
CTCTCTTTCTTCTCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_l17.g1 MSMg01no205_l17.g1 CHROMAT_FILE:
MSMg01no205_l17.g1 PHD_FILE: MSMg01no205_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:40 2005
         (257 letters)



>mm_chr18_40467473_40468128
          Length = 656

 Score =  379 bits (196), Expect = e-110
 Identities = 235/248 (94%), Gaps = 1/248 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggccactgactgaacca 60
           |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 447 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 388

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 387 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 329

                                                                       
Query: 121 cagaaagaggaaggctccactcactagtacactttcactagaagcctcgccctgtcagca 180
           ||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct: 328 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 269

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 268 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 209

                   
Query: 241 tgtttaat 248
           ||||||||
Sbjct: 208 tgtttaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 656
Length adjustment: 9
Effective length of query: 248
Effective length of database: 647
Effective search space:   160456
Effective search space used:   160456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)