BAC Information

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BAC

Clone NameMSMg01-207P17
Chromosome18 (Build37)
Map Location 89,174,194 - 89,174,607
singlet/doubletsinglet
Overlap geneRttn
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6
Downstream geneCd226, Dok6, LOC383320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207P17.T7 (MSMg01no207_p17.b1)MSMg01-207P17.TJ (MSMg01no207_p17.g1)
ACCAG391018AG391019
length1,2251,206
length of high quality
(start - end)
422 (28 - 449)319 (142 - 460)
definitionCHROMAT_FILE: MSMg01no207_p17.b1 PHD_FILE: MSMg01no207_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:37 2005CHROMAT_FILE: MSMg01no207_p17.g1 PHD_FILE: MSMg01no207_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAATCACTGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCT
CATTGCAGTTTTTGACATCAGAAAGGATTTAATAGGAGTCCCATTAGTGT
CTTTGTCTAGGTCACCATTTTGAACCGCCGGTGATCCTTGCATGCTGGTT
ATTTCTGCAGATTAAACGCTTTTTTTTGCCCACTATTTGAGTCTGGGGTC
TTCCTTCAGTGATTTCAAACCCTAACACTAAATTGTAGTTACCATGGAGT
TAGACCCTCTAGGTTATATTATTTCAGTACTGTGTGTCCAAGTCTCCTTT
ACTTGTTTTATTTTCCTTAGTCTTTCAAATGTAGAAGACTGACCTCATGA
AATACCTCTCTTTATGTGATCTTTAAATATGATTTATTTGCTTATGATCC
CAGGTTGTATGTTTACAGGCAAGGCATTCACATGTATCATGTTTCATGTT
TTTTTTCTCCCCCATATCTCTTGTGTTCCCTTTCAAAAAAAACATTTGGA
TAGTGGTATCTCTAACTCTCTACCTCAGACCTAATTCTTTGCTTCATAAG
TGTTTTCTCCCCATAGTCTTTGTTATTTTAGTAAATAGTATCTTCATTTT
CCACATGTTAATTTTTTACGTAAAAGGTTCTAGTCCTTAAGTATAGTTTC
TCCAGTGTTAAGTACCTGAGTTGAACCCAATGTCCTGTTTGGTCTGTGTA
ATTGCAGTGAACTCTTCCTTAATCTCTCTCTTCTTACCTTTGTTTTACTC
TGTATTCTCTGCAGACTAGTCAGACTAATGCTTGCTTGTATTCTGCCAAG
GGCTTCTATCTGTTGAGCAATCCTTAAGAAAGATCAAAGTCTTAATTGAT
CCGATTCTTCTTTCCCTATTTCCATCCCTTCGCACTATTTATAATGACCT
ATTTGGAGGTTTTTCTCNTTTCCCTTCCCNTTCTCTTTCTCTCTCTCTTT
TTCTTTTGAACCTTGTCCCCTGTCCTCTGGTTTCTGGATTCTCTCCCCCC
TCTTCCCCACACCACTTTTATTTTTCCTCTCCTTCTTATCTTANCCTATC
CTCCCTCTTCTTTCTCGCTTATTTTTTCTATTCTTTTCTTCTCTTCTCTT
TTTTTTTATCTTTCTCCTCTTTCATTCTCCTTTCGTTTCTTTTCATTTCC
TCNTTTCTTTCTTCTCTTATTCCTTCTCTTTCATCTTCCTATCTCTTTTC
CTCTCTTTATANTCTTCCTTCTCTA
CAGTCTTTNNNNAAAGAGGTGAGCCTGGGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTCTATAAGCCCGTTACATATT
CAGTAACATTCAAATTCTACCTTTAACAGCGCAACTAACTAGGCATTACA
AAGAATAGAGCTAGAAAAGCTCAGGGCTAGTCTGCATAGTAATTCCTTAG
GACAATAGCCAAGAGACACCCAAACACAGGAATACACAATAGCCTAGGAA
ATAGATGGGTTGTTGCATGAAAGGGTTAGTGGAAGGCAATTCCCCTGGTG
CAGGTTTTTTCACTAGGCCCAGAGGAATAGCATAATCAGGTATTTACTAA
AGAACCCCTGGTGGTGGGTTTAACAATAGACTAGCATTGTATCAGAGCAT
TCACCTGGCTCCTGTGTTTAGCTGATCTTTTAAATTAAGGGTTGTTCCTA
TTCTCAGTGGTAATCTTTTTTTGCCCCCTGCCATCTTTTTATGTATGCAT
TCTTTATGATTTGTGTAACTTGGCAGAAATGTGTTCGCCTGGTTTTCTTG
TTTTTCTTCTGTATTAAAAGTCTGGTGTTCATTTGGAGAATATACATTGA
GATTCAGCACACTCTCTCCAGTCCATGTCTGTCTGTCAATTCTTACTGAC
CCTGTTCACCTGCAACCAGAAACCCCTTTCTCACAGATAGGAGACCCAAT
AGAGGTTAGTCTGTGGCAACAAAGGAGCTAANACCATCCACTGGAAAGAA
GACAGCATTTTCAACAAATGGGGCTGGCTCAACTGGCCGTTTATATGTAG
AAAAATGCCAAATGCCCATTCCTATCTCCTTGTACCAAGCTCAGGGTAAT
GGATCAAGAATTGCACATAAAACCCAGAGACTCTTGAACTTAAAGAGGAG
AAAGTAGCGGAGGGCCTGGCTCATAGCGCTCCTGGCTCAAAATTTCCGGA
CCGATCCCCAATGGCTTGTGGCTATTTAATCTAGATCCTCCTATTGGCAC
CTCCCAACATTTCCAAACCTTCTGGGTAGGCACCTCGCCCCCTGCTACTC
TCCAAATACCCTTCTTCCACCTTTAGTTGGCTCAACCCTTTTCTTTCCTC
CTAAATCCTTTATCGGGGTCCCATTTTCCTTNCTATCTTNTCCTATCCTT
CCTCTTCTCTCTTTTACTATACCCTATTCGTCCCCTCATTAATATGCTGC
ATTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_p17.b1 MSMg01no207_p17.b1 CHROMAT_FILE:
MSMg01no207_p17.b1 PHD_FILE: MSMg01no207_p17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:37 2005
         (422 letters)



>mm_chr18_89173986_89174807
          Length = 822

 Score =  712 bits (368), Expect = 0.0
 Identities = 399/414 (96%), Gaps = 8/414 (1%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattctcattgcagtttttgacatcagaaaggatttaataggagtcccattagtgtctt 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattctcattgcagtttttgacatcagaaaggatttaataggagtcccattagtgtctt 268

                                                                       
Query: 77  tgtctaggtcaccattttgaaccgccggtgatccttgcatgctggttatttctgcagatt 136
           |||||||||||||||||||||  |  |||||||| |||||||||||||||||||||||||
Sbjct: 269 tgtctaggtcaccattttgaagtggtggtgatccctgcatgctggttatttctgcagatt 328

                                                                       
Query: 137 aaacgc--------ttttttttgcccactatttgagtctggggtcttccttcagtgattt 188
           ||||||        ||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 329 aaacgcttttttttttttttttgcatactatttgagtctggggtcttccttcagtgattt 388

                                                                       
Query: 189 caaaccctaacactaaattgtagttaccatggagttagaccctctaggttatattatttc 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 caaaccctaacactaaattgtagttaccatggagttagaccctctaggttatattatttc 448

                                                                       
Query: 249 agtactgtgtgtccaagtctcctttacttgttttattttccttagtctttcaaatgtaga 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 agtactgtgtgtccaagtctcctttacttgttttattttccttagtctttcaaatgtaga 508

                                                                       
Query: 309 agactgacctcatgaaatacctctctttatgtgatctttaaatatgatttatttgcttat 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 agactgacctcatgaaatacctctctttatgtgatctttaaatatgatttatttgcttat 568

                                                                 
Query: 369 gatcccaggttgtatgtttacaggcaaggcattcacatgtatcatgtttcatgt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gatcccaggttgtatgtttacaggcaaggcattcacatgtatcatgtttcatgt 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)