BAC Information

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BAC

Clone NameMSMg01-211B06
Chromosome18 (Build37)
Map Location 40,467,675 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211B06.T7 (MSMg01no211_b06.b1)MSMg01-211B06.TJ (MSMg01no211_b06.g1)
ACCAG392952AG392953
length751731
length of high quality
(start - end)
320 (46 - 365)293 (79 - 371)
definitionCHROMAT_FILE: MSMg01no211_b06.b1 PHD_FILE: MSMg01no211_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:56 2005CHROMAT_FILE: MSMg01no211_b06.g1 PHD_FILE: MSMg01no211_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:35:56 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAGGGAAATCATCACTCAGGGACTTCAGGCAGAAAACTAGCCAG
TCAGCCTCTGGATAGACAAGGCTCAACAGTTCAGAGAACCAGGCCATCGC
AAATAGTTCACAGACCTGCAAGGAAGACATGCAGATCCCTGCCCCCCACC
CCACCCCTCCCTCAGCCCCACCCAAACATAGGGAGAAAAGGCAGTGTGGG
GGAGGGGGAGGTGCTGTGAGCGAATTTAGATAGCTCGAAGAAATAAATAG
CTGGAGACTTCATTCATTTACTTATTTTATTGAGTATATGGTGAAAGAGG
GAAAATGGCTCAAATTTTTTTTTTGCCCCACCGCCCTCCCATGCTGGGAT
CATTCATGCCTTAAGAAGATTTGTAGGAGGATGGAAAGATGGCTTATCGG
TTTAGAGCCCCGACTGCTCTTCTGATGATCCTGAGTTTTTATTCCCGCAC
CCTTATGGTGTTTGCCCTCTTTCTATCTTTTCCCCTTTTCCTCCCCCTCC
CTTTTTCCCCCCTTTTTCCCCATTTTTTTCCCCCTTCCCCCTTTTTTTCC
CCTTTCCCCTCCCTTTCCCCCCTTTTTTTCCCTCTTTCCTTTCTTTTTTT
TTTCCTTTTTTTCCCCCTCCATCACCCCTTCCCCTCCCTTTTTCCCTCTT
TTTTTTTTTCCGCTCCCCTTATTCCTACCCTTTTTTTTCGTTTTTACATT
T
ACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCAG
GTCCACATTTGCTCTGGCTCTGGCAACTGACTGAACCAAACAATTAGGCT
CATACCTAGAACTTTGGAAATGGTAATGGAGTTGATAACACACCCTAACA
GAAAGAGGAAGGCTCCACTCACTAGTACACTTTCACTAGAAGCCTCGCCC
TGTCAGCAGTTTAGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGG
TTTGGAATTTCTACTTCATGTTTATTTTTTTTATTTTATTTTTTTTTTTG
AGACAGAGTTTCTCTGTTTTTTCTTGCCCCCCCCCCCCCCTCTTTTGAAG
ATCACCCTGTCCTCGACTTCTGAAATACACCTGAAACAGACTCCCGAGTG
CTGTGATTAAAGGCGTGCATCCCCTCGCCAGTTCCCACGTTTCACGTTCA
TCACACTCTTTTTACACATTCACTAAACATTGCCGACGTCCGCACATATG
AATCACCCGTTAATAATATCGACTTTCCTTGCACAGGTACCGACGCTCCT
TCCCCGCAACCCTTTGCGCGCCTTTGTCGTGTTATTGCCCGTTTCTGCTG
CGCGGCCTTTCCTCCCCCCTTTTTTTCCCTTTTTCCCCCCCCTTCCCCTT
TTTTTTTCCCTCCCTCTCCGTTCTTTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_b06.g1 MSMg01no211_b06.g1 CHROMAT_FILE:
MSMg01no211_b06.g1 PHD_FILE: MSMg01no211_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:35:56 2005
         (293 letters)



>mm_chr18_40467479_40468170
          Length = 692

 Score =  383 bits (198), Expect = e-111
 Identities = 234/246 (95%), Gaps = 1/246 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 382

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 381 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 323

                                                                       
Query: 121 cagaaagaggaaggctccactcactagtacactttcactagaagcctcgccctgtcagca 180
           ||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct: 322 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 263

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 262 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 203

                 
Query: 241 tgttta 246
           ||||||
Sbjct: 202 tgttta 197


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 692
Length adjustment: 9
Effective length of query: 284
Effective length of database: 683
Effective search space:   193972
Effective search space used:   193972
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)