BAC Information

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BAC

Clone NameMSMg01-215B22
Chromosome18 (Build37)
Map Location 32,933,667 - 32,934,275
singlet/doubletsinglet
Overlap genenone
Upstream geneAmmecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170
Downstream geneTslp, Wdr36, Camk4, Stard4, EG433170, D0H4S114, ENSMUSG00000073610, LOC666281, LOC100041258
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215B22.T7 (MSMg01no215_b22.b1)MSMg01-215B22.TJ (MSMg01no215_b22.g1)
ACCAG395488AG395489
length729738
length of high quality
(start - end)
318 (33 - 350)608 (131 - 738)
definitionCHROMAT_FILE: MSMg01no215_b22.b1 PHD_FILE: MSMg01no215_b22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:40 2005CHROMAT_FILE: MSMg01no215_b22.g1 PHD_FILE: MSMg01no215_b22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:41 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTCTTTA
TGTCCTCTACCATCATCATGAGATATGCTTTTAAATCCAGGTCTACCTTT
TCAGGTGTGTTAGCCTGTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTC
TGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGATTCTTACGTTTAC
CTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTT
AAAAGATTGTTCCTCTGTTGATTTTGTTACCCTCTATCAGCAGGCGTGGG
AGACAAGCTCTCTTCTCTGAGTTTCAGTGGTCAGAGCAGTCTCTGTAGGC
AATTNNCTCNCTCTCCCGCACGCCCCCAGTTATCTGGTGTTTGGACCTCC
TCCTGGCTGAAGGTGAAGGACCAAAACAAGATCTTTCCCAGAAGCTGTGT
TGCTTTGGCCAGGAAGGTGGCCAGTTGTCTGGAGTCGAAGATGTCGCAGC
CTCAGAAGCTCTGTGGCTCTTGCCGGGAAGGTGGCTGGTTGTCTGGAGCT
GAGGATGGTGCCGCCCCAGAATCTCTGCGACTCTCTCGCCCGTCCCAGAA
ACGGCTGGCACTCTGTATTCCACACGGTCACCCGTGCAGCCTGCCCTCCG
CGGAGTCTCGGAGCCAAGAAGGCTCCCGCCGGCGCCTGTGCCACAAACCT
CTCAGGCCAGGCAGACCCCCGTGCTCTCA
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTAGCTCATCACCAAAGGAACAAAG
GACAATAGGCAAATTGGGGATTCTTTCTTGATGCTGAGGTCACACTAGGC
TAGACTTGAGTGATCTTTGGTTCTGTAAGAGCTCTGAGATTCATGGATGA
GAGGTCGCAGCACAGAGTAACAGGCCATCACCCTGGAATGAGGACAGACT
CATATATTTGAGTTATGATTCTGTTGCTTATTATATAAAGTTAAGGCTAT
CATTTTAACTCTGCAATCCCGTTTCCTTGTGAGTGACATTATCAACATCT
CTAGTATTGTGAGGGGTAAATGAGACAGTTGTAAGCCCCAGGAAGGGTTA
TGTCCATTGTTATTATTTGTGGCTCTCCTTCTATTACATGATAACTAGAA
AACAAGGCTTATTGGTGTAATTCTTCTAGAGACACATTTACTCCATATAA
CTACAGTGAACAACAATATGGACCATATGCTCTAGAATTCAATGTTTAAC
ATTTTTATGGGTTGGCAAGATGGGTGAGTGAGTAAGGGTGTCGGCTGCCA
AGCCTGATGACCAGAGCTTAATCCCTGAAACTCATAGAACGGAAGGAAAG
AACCAACTGTTGCAACATACTCCCTGGCTCATCTCCCTTCCTCTTCCTTC
TNAATGATAAAAAATAAAATAACACTCTGAATTCTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_b22.g1 MSMg01no215_b22.g1 CHROMAT_FILE:
MSMg01no215_b22.g1 PHD_FILE: MSMg01no215_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:41 2005
         (608 letters)



>mm_chr18_32933648_32934655
          Length = 1008

 Score = 1104 bits (571), Expect = 0.0
 Identities = 600/610 (98%), Gaps = 3/610 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgctgaggtcacactaggctagacttgagtgatctttggttctgtaagagctctgagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 atgctgaggtcacactaggctagacttgagtgatctttggttctgtaagagctctgagat 569

                                                                       
Query: 61  tcatggatgagaggtcgcagcacagagtaacaggccatcaccctggaatgaggacagact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tcatggatgagaggtcgcagcacagagtaacaggccatcaccctggaatgaggacagact 509

                                                                       
Query: 121 catatatttgagttatgattctgttgcttattatataaagttaaggctatcattttaact 180
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 508 catatatttgagttatgattctgttgcttattggataaagttaaggctatcattttaact 449

                                                                       
Query: 181 ctgcaatcccgtttccttgtgagtgacattatcaacatctctagtattgtgaggggtaaa 240
           ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 448 ctgcaatcccggttccttgtgagtgacattatcaacatctgtagtattgtgaggggtaaa 389

                                                                       
Query: 241 tgagacagttgtaagccccaggaagggttatgtccattgttattatttgtggctctcctt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 388 tgagacagttgtaagccccaggaagggttatgtccattgttattatttgtggttctcctt 329

                                                                       
Query: 301 ctattacatgataactagaaaacaaggcttattggtgtaattcttctagagacacattta 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctattacatgatagctagaaaacaaggcttattggtgtaattcttctagagacacattta 269

                                                                       
Query: 361 ctccatataactacagtgaacaacaatatggaccatatgctctagaattcaatgtttaac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctccatataactacagtgaacaacaatatggaccatatgctctagaattcaatgtttaac 209

                                                                       
Query: 421 atttttatgggttggcaagatgggtgagtgagtaagggtgtcggctgccaagcctgatga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 atttttatgggttggcaagatgggtgagtgagtaagggtgtcggctgccaagcctgatga 149

                                                                       
Query: 481 ccagagcttaatccctgaaactcatagaacggaaggaaagaaccaactgttgcaacatac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 ccagagcttaatccctgaaactcatagaacggaaggaaagaaccaactgttgcaacatac 89

                                                                       
Query: 541 tccctggctcatctcccttcctcttccttctnaatgataa-a-aaataaaataacactct 598
           ||||||||||||||||||||||||||||||| |||||||| | ||| |||||||||||||
Sbjct: 88  tccctggctcatctcccttcctcttccttctaaatgataatagaaa-aaaataacactct 30

                     
Query: 599 gaattcttac 608
           ||||||||||
Sbjct: 29  gaattcttac 20


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)